DATASET ID: GSE122680 (2dpf)

Basic information

Tissue / Organ retina
Experiment type baseline
Sample 2dpf, WT, untreatment
Source dataset ID GSM4233148
Project ID GSE122680
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Bipolar cells ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1242/dev.185660 1 Bipolar cells ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1242/dev.185660
    1 Bipolar cells ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1242/dev.185660 1 Bipolar cells ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1242/dev.185660
    2 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660 2 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660
    2 Amacrine cells ENSDARG00000103379 (pax6a) protein_coding marker DOI:10.1242/dev.185660 2 Amacrine cells ENSDARG00000103379 (pax6a) protein_coding marker DOI:10.1242/dev.185660
    2 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660 2 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660
    2 Amacrine cells ENSDARG00000103379 (pax6a) protein_coding marker DOI:10.1242/dev.185660 2 Amacrine cells ENSDARG00000103379 (pax6a) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000091150 (mki67) protein_coding marker DOI:10.1242/dev.185660 3 Retinal progenitors ENSDARG00000091150 (mki67) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660 3 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000091150 (mki67) protein_coding marker DOI:10.1242/dev.185660 3 Retinal progenitors ENSDARG00000091150 (mki67) protein_coding marker DOI:10.1242/dev.185660
    3 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660 3 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660
    4 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660 4 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660
    4 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660 4 Retinal progenitors ENSDARG00000087554 (cdk1) protein_coding marker DOI:10.1242/dev.185660
    6 Retinal progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.185660 6 Retinal progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.185660
    6 Retinal progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.185660 6 Retinal progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1242/dev.185660
    7 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660 7 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660
    7 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660 7 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660
    8 Retinal ganglion cells ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1242/dev.185660 8 Retinal ganglion cells ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1242/dev.185660
    8 Retinal ganglion cells ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1242/dev.185660 8 Retinal ganglion cells ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1242/dev.185660
    8 Retinal ganglion cells ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1242/dev.185660 8 Retinal ganglion cells ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1242/dev.185660
    8 Retinal ganglion cells ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1242/dev.185660 8 Retinal ganglion cells ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1242/dev.185660
    10 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660 10 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660
    10 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660 10 Amacrine cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.1242/dev.185660
    11 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660 11 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660
    11 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660 11 Photoreceptor cells ENSDARG00000019902 (rcvrn2) protein_coding marker DOI:10.1242/dev.185660
    12 Horizontal cells ENSDARG00000020544 (rem1) protein_coding marker DOI:10.1242/dev.185660 12 Horizontal cells ENSDARG00000020544 (rem1) protein_coding marker DOI:10.1242/dev.185660
    12 Horizontal cells ENSDARG00000020544 (rem1) protein_coding marker DOI:10.1242/dev.185660 12 Horizontal cells ENSDARG00000020544 (rem1) protein_coding marker DOI:10.1242/dev.185660

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)