Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
vsx1 | 17: 21063403 ~ 21066105 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Retina neuroblasts (cluster: 6) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
Bipolar cells (cluster: 5) |
marker |
DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z |
|
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Bipolar cells (cluster: 6) |
marker |
DOI:10.1242/dev.185660 |
|
GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment |
Bipolar cells (cluster: 2) |
marker |
DOI:10.1242/dev.185660 |
|
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Bipolar cells (cluster: 1) Bipolar cells (cluster: 1) |
marker marker |
DOI:10.1242/dev.185660 DOI:10.1242/dev.185660 |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Neuron (cluster: 7) |
potential marker |
NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Neuron (cluster: 10) Neuron (cluster: 4) |
potential marker potential marker |
NA NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Retina neuroblasts (cluster: 7) |
potential marker |
NA |
|
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
Bipolar cells (cluster: 1) |
potential marker |
NA |
|
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih |
Bipolar cells (cluster: 1) |
potential marker |
NA |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | ||||
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment | ||||
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment | ||||
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | ||||
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | ||||
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |