Fish Single-cell RNA Database

GENE ID: ENSDARG00000104219

Symbol	Location	Gene type	Genome version	Species
gpc6b	9: 53364472 ~ 53422084 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000104219 (gpc6b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000001939	b3gat3	7: 25015151 ~ 25029261 (+)
ENSDARG00000054539	lrp10	7: 24153070 ~ 24162868 (+)
ENSDARG00000056648	ext2	7: 26844261 ~ 26892613 (+)
ENSDARG00000035578	hs3st1l2	5: 21100356 ~ 21141090 (+)
ENSDARG00000052648	hs3st4	3: 44541322 ~ 44753325 (-)
ENSDARG00000059616	hs3st2	3: 44947355 ~ 45000645 (+)
ENSDARG00000061248	xylt1	3: 26418451 ~ 26524934 (-)
ENSDARG00000059557	xylt2	3: 60177774 ~ 60226027 (+)
ENSDARG00000070074	lrp8	6: 34511886 ~ 34811508 (+)
ENSDARG00000062008	hs2st1b	6: 26063962 ~ 26225814 (-)
ENSDARG00000054754	hs6st1a	2: 40901997 ~ 41124013 (-)
ENSDARG00000099478	hs2st1a	2: 22363824 ~ 22398790 (+)
ENSDARG00000059948	si:dkey-121b10.7	1: 52264131 ~ 52292235 (-)
ENSDARG00000041776	ndst3	1: 20147222 ~ 20273227 (-)
ENSDARG00000069500	hs6st3b	9: 29338986 ~ 29427576 (-)
ENSDARG00000104219	gpc6b	9: 53364472 ~ 53422084 (-)
ENSDARG00000103155	ext1a	16: 48460873 ~ 48573510 (+)
ENSDARG00000055271	nkd2a	16: 52999778 ~ 53054838 (+)
ENSDARG00000073870	gdpd2	14: 33219370 ~ 33265068 (-)
ENSDARG00000012025	hs6st2	14: 31081862 ~ 31087830 (-)
ENSDARG00000086269	ndst2a	13: 21888214 ~ 22095934 (+)
ENSDARG00000078163	hpse2	13: 40501455 ~ 40668077 (+)
ENSDARG00000030733	b3gat2	13: 27951688 ~ 28009574 (+)
ENSDARG00000062756	pllp	18: 18861359 ~ 18870632 (+)
ENSDARG00000060253	si:ch211-216b21.2	12: 36669128 ~ 36740781 (-)
ENSDARG00000086645	hs3st3b1b	12: 36971952 ~ 37006301 (+)
ENSDARG00000059903	hs3st3l	12: 415711 ~ 431249 (-)
ENSDARG00000007906	lrp2b	12: 16132612 ~ 16229402 (+)
ENSDARG00000098845	lrp12	19: 13375838 ~ 13397295 (+)
ENSDARG00000069375	zgc:162608	15: 21875545 ~ 21877996 (-)
ENSDARG00000029146	lrp1ab	23: 25452656 ~ 25686954 (-)
ENSDARG00000079293	gdpd4b	21: 22311964 ~ 22325124 (-)
ENSDARG00000063634	hpse	21: 19345558 ~ 19364352 (+)
ENSDARG00000038414	b3galt6	11: 2685112 ~ 2690933 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000104219

EXPRESSION

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