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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •    
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • Early round spermatids
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Early round spermatids 1
  • Germline stem cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Germline stem cells 5
  • Late round spermatids
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Late round spermatids 10
  • Leptotene primary spermatocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Leptotene primary spermatocytes 8
  • Leydig cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Leydig cells 12
  • Metaphase,anaphase primary spermatocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Metaphase,anaphase primary spermatocytes 6
  • Pachytene primary spermatocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Pachytene primary spermatocytes 3
  • Premeiotic S phase cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Premeiotic S phase cells 7
  • Secondary spermatocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Secondary spermatocytes 9
  • Sertoli cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Sertoli cells 11
  • Spermatogonia B
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Spermatogonia B 4
  • Zygotene primary spermatocytes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE153961 (intersex) adult, untreatment gonad baseline GSE153961 Zygotene primary spermatocytes 2

  • Click the arrow to add the sample you choose.
  • Support manual input.
  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
  • Multiple symbols are supported, separated by any punctuation, blank character, or line break.
  • More symbol need more time.
  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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