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NOTE: search by id.

EXAMPLES:

species Danio rerio
tissue pituitary
cell type Erythroid cells
gene ENSDARG00000077809
il13
project GSE158142
dataset GSE158142 (20hpf)


  •  Japanese medaka
    (Oryzias latipes)
  •    
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)


  •  Japanese medaka
    (Oryzias latipes)
  •  mexican tetra
    (Astyanax mexicanus)
  •  Nile tilapia
    (Oreochromis niloticus)
  •  rainbow trout
    (Oncorhynchus mykiss)
  •  swamp eel
    (Monopterus albus)
  •  three-spined stickleback
    (Gasterosteus aculeatus)
  •  turquoise killifish
    (Nothobranchius furzeri)
  •  zebrafish
    (Danio rerio)
  •  zig-zag eel
    (Mastacembelus armatus)

CELL TYPE

  • The folded tree shows the cell types of the species covered by the FishSCT.
  • Click on the node of the fold tree to browse the details of the dataset with that cell type.
  • Check the dataset checkbox for dataset selection for multiple search and visualization.
  • If you only selects cell types and no genes, all marker genes of these cell types will be displayed.
  • Cga-expressing cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Cga-expressing cells 15
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Cga-expressing cells 15
  • Corticotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Corticotropes 2
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Corticotropes 2
  • Fsh-gonadotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Fsh-gonadotropes 8
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Fsh-gonadotropes 8
  • Gonadotrope
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Gonadotrope 10
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Gonadotrope 10
  • Lactotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Lactotropes 3
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Lactotropes 4
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Lactotropes 3
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Lactotropes 4
  • Lh-gonadotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Lh-gonadotropes 9
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Lh-gonadotropes 9
  • Macrophages
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Macrophages 12
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Macrophages 12
  • Melanophores
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Melanophores 1
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Melanophores 1
  • Red blood cells
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Red blood cells 11
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Red blood cells 11
  • Somatolactotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Somatolactotropes 5
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Somatolactotropes 5
  • Somatotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Somatotropes 6
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Somatotropes 6
  • Thyrotropes
    • Dataset ID Sample Tissue / Organ Experiment type Project ID Cell type Cluster
      GSE162787 (male) male, adult, untreatment pituitary baseline GSE162787 Thyrotropes 7
      GSE162787 (female) female, adult, untreatment pituitary baseline GSE162787 Thyrotropes 7

  • Click the arrow to add the sample you choose.
  • Support manual input.
  • IDs are separated by  / .

Gene

  • Please fill in the gene ID in FishSCT for multiple search and visualization.
  • If you have symbol, you can quickly search for its ID in FishSCT.
  • Multiple symbols are supported, separated by any punctuation, blank character, or line break.
  • More symbol need more time.
  • If you only selects genes and no cell types, all marker information of these genes will be displayed.

  • Click the arrow to add the gene you choose.
  • Support manual input.
  • Support genes without symbol.
  • IDs are separated by space.


      

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