Fish Spatial Expression Database

GENE ID: ENSDARG00000019278

Symbol	Location	Gene type	Genome version	Species
NA	2: 5300405 ~ 5311253 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000019278 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000017757	pik3cg	4: 3343171 ~ 3353595 (-)
ENSDARG00000068246	plcb3	7: 60255852 ~ 60351876 (-)
ENSDARG00000036058	gnao1b	7: 29133321 ~ 29144547 (+)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000037921	gng13b	3: 35589212 ~ 35602233 (-)
ENSDARG00000088634	adcy1b	2: 136346 ~ 155270 (-)
ENSDARG00000039830	gng5	2: 6243144 ~ 6249163 (+)
ENSDARG00000038693	gng7	2: 36990024 ~ 37043905 (-)
ENSDARG00000031783	adcy8	2: 42776224 ~ 42871286 (-)
ENSDARG00000019278	NA	2: 5300405 ~ 5311253 (+)
ENSDARG00000091342	adcy5	9: 37872577 ~ 38021997 (-)
ENSDARG00000032838	si:dkey-206f10.1	20: 43602810 ~ 43644531 (+)
ENSDARG00000046143	prkab1b	8: 39674707 ~ 39703689 (+)
ENSDARG00000043141	si:ch211-132f19.7	17: 33311784 ~ 33339626 (+)
ENSDARG00000090381	NA	17: 2348540 ~ 2386569 (-)
ENSDARG00000056831	gng2	13: 12045475 ~ 12088835 (+)
ENSDARG00000016676	gnao1a	18: 22793465 ~ 22975655 (+)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000061445	adcy6a	23: 13940958 ~ 14059085 (-)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000027797	adcy6b	23: 26797035 ~ 26888217 (-)
ENSDARG00000009553	gng3	21: 26697536 ~ 26707052 (+)
ENSDARG00000032157	grk6	21: 36623162 ~ 36737293 (+)
ENSDARG00000036670	aplnrb	10: 8629275 ~ 8631361 (+)
ENSDARG00000075850	gnal2	24: 36018164 ~ 36027426 (+)
ENSDARG00000092481	si:ch211-207c7.2	22: 21965148 ~ 21968364 (+)
ENSDARG00000092948	gna15.3	22: 21972824 ~ 21984064 (+)
ENSDARG00000056654	gna15.3	22: 22004082 ~ 22014961 (+)
ENSDARG00000043006	gnav1	22: 11538392 ~ 11594414 (-)
ENSDARG00000017722	chrm4b	25: 7882847 ~ 7887274 (-)
ENSDARG00000070003	NA	--
ENSDARG00000070460	NA	--
ENSDARG00000078356	NA	--
ENSDARG00000068890	NA	--
ENSDARG00000089997	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to A, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole, replicate	GSM1448797	GSE59873
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
	GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000019278

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.