BROWSE AND DOWNLOAD


  • Download of the manuscript and supplementary file of FishSED.
  • The expression profile data for each dataset can be downloaded by clicking the download link.

    • Dataset ID Tissue / organ Technique Experiment type Sample description Source dataset ID Project ID Download link
    GSE159709 (Visium-sample A) tumor Visium cancer adult, zebrafish with BRAFV600E-driven melanomas GSM4838131 GSE159709 GSM4838131
    GSE159709 (Visium-sample B) tumor Visium cancer adult, zebrafish with BRAFV600E-driven melanomas GSM4838132 GSE159709 GSM4838132
    GSE159709 (Visium-sample C) tumor Visium cancer adult, zebrafish with BRAFV600E-driven melanomas GSM4838133 GSE159709 GSM4838133
    GSE158849 (embryo replicate1) embryo Tomo-seq baseline one-cell stage, 0.3hpf, untreatment GSM4812175 GSE158849 GSM4812175
    GSE158849 (embryo replicate2) embryo Tomo-seq baseline one-cell stage, 0.3hpf, untreatment GSM4812176 GSE158849 GSM4812176
    GSE158849 (embryo replicate3) embryo Tomo-seq baseline one-cell stage, 0.3hpf, untreatment GSM4812177 GSE158849 GSM4812177
    GSE74652 (3 days-post-cryoinjury) heart Tomo-seq regeneration adult, cryoinjured ventricle of the heart, extracted heart at 3 days-post-cryoinjury GSM1924887 GSE74652 GSM1924887
    GSE74652 (7 days-post-cryoinjury) heart Tomo-seq regeneration adult, cryoinjured ventricle of the heart, extracted heart at 7 days-post-cryoinjury GSM1924888 GSE74652 GSM1924888
    GSE59873 (shield, A to V) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from animal to vegetal pole GSM1448795 GSE59873 GSM1448795
    GSE59873 (shield, V to A) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from vegetal to animal pole GSM1448796 GSE59873 GSM1448796
    GSE59873 (shield, V to A, replicate) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from vegetal to animal pole, replicate GSM1448797 GSE59873 GSM1448797
    GSE59873 (shield, L to R) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from left to right GSM1448798 GSE59873 GSM1448798
    GSE59873 (shield, R to L) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from right to left GSM1448799 GSE59873 GSM1448799
    GSE59873 (shield, V to D) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from ventral to dorsal end GSM1448800 GSE59873 GSM1448800
    GSE59873 (shield, D to V) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from dorsal to ventral end GSM1448801 GSE59873 GSM1448801
    GSE59873 (shield, D to V, replicate) embryo Tomo-seq baseline shield stage, intact embryo, sectioned from dorsal to ventral end, replicate GSM1448802 GSE59873 GSM1448802
    GSE59873 (10 somite, A to P) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from anterior to posterior end GSM1448803 GSE59873 GSM1448803
    GSE59873 (10 somite, A to P, replicate) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate GSM1448804 GSE59873 GSM1448804
    GSE59873 (10 somite, P to A) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from posterior to anterior end GSM1448805 GSE59873 GSM1448805
    GSE59873 (10 somite, V to D) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from ventral to dorsal end GSM1448806 GSE59873 GSM1448806
    GSE59873 (10 somite, D to V) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from dorsal to ventral end GSM1448807 GSE59873 GSM1448807
    GSE59873 (10 somite, L to R) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from left to right GSM1448808 GSE59873 GSM1448808
    GSE59873 (10 somite, R to L) embryo Tomo-seq baseline 10 somite stage, intact embryo, sectioned from right to left GSM1448809 GSE59873 GSM1448809
    GSE59873 (15 somite, A to P) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from anterior to posterior end GSM1448810 GSE59873 GSM1448810
    GSE59873 (15 somite, P to A) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from posterior to anterior end GSM1448811 GSE59873 GSM1448811
    GSE59873 (15 somite, V to D) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from ventral to dorsal end GSM1448812 GSE59873 GSM1448812
    GSE59873 (15 somite, D to V) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from dorsal to ventral end GSM1448813 GSE59873 GSM1448813
    GSE59873 (15 somite, L to R) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from left to right GSM1448814 GSE59873 GSM1448814
    GSE59873 (15 somite, R to L) embryo Tomo-seq baseline 15 somite stage, intact embryo, sectioned from right to left GSM1448815 GSE59873 GSM1448815
    GSE59873 (15 somite, H to T) embryo Tomo-seq baseline 15 somite stage, deyolked embryo, straightened, sectioned head to tail GSM1448816 GSE59873 GSM1448816
    GSE59873 (15 somite, T to H) embryo Tomo-seq baseline 15 somite stage, deyolked embryo, straightened, sectioned tail to head GSM1448817 GSE59873 GSM1448817
    GSE59873 (15 somite, T to H, replicate) embryo Tomo-seq baseline 15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate GSM1448819 GSE59873 GSM1448819
    GSE59873 (18 somite, T to H) embryo Tomo-seq baseline 18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head GSM1448820 GSE59873 GSM1448820
    GSE104057 (heart replicate1) heart Tomo-seq baseline late embryo, 2dpf, isolated embryonic heart GSM2788518 GSE104057 GSM2788518
    GSE104057 (heart replicate2) heart Tomo-seq baseline late embryo, 2dpf, isolated embryonic heart GSM2788519 GSE104057 GSM2788519
    GSE104057 (heart replicate3) heart Tomo-seq baseline late embryo, 2dpf, isolated embryonic heart GSM2788520 GSE104057 GSM2788520
    GSE128350 (1.67dpf whole embryo replicate1) embryo Tomo-seq baseline late embryo, 1.67dpf, whole embryo, untreatment GSM3672145 GSE128350 GSM3672145
    GSE128350 (1.17dpf whole embryo replicate1) embryo Tomo-seq baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672146 GSE128350 GSM3672146
    GSE128350 (1.17dpf whole embryo replicate2) embryo Tomo-seq baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672147 GSE128350 GSM3672147
    GSE128350 (1.17dpf trunk) embryo Tomo-seq baseline late embryo, 1.17dpf, trunk, untreatment GSM3672148 GSE128350 GSM3672148
    GSE128350 (1.67dpf trunk) embryo Tomo-seq baseline late embryo, 1.67dpf, trunk, untreatment GSM3672149 GSE128350 GSM3672149
    GSE128350 (1.67dpf whole embryo replicate2) embryo Tomo-seq baseline late embryo, 1.67dpf, whole embryo, untreatment GSM3672157 GSE128350 GSM3672157
    GSE128350 (1.17dpf whole embryo replicate3) embryo Tomo-seq baseline late embryo, 1.17dpf, whole embryo, untreatment GSM3672158 GSE128350 GSM3672158
    cvab004 (S2) heart Tomo-seq baseline late embryo, 1.08dpf, untreatment S2 cvab004 S2
    cvab004 (S3) heart Tomo-seq baseline late embryo, 1.08dpf, untreatment S3 cvab004 S3
    cvab004 (S4) heart Tomo-seq baseline late embryo, 1.08dpf, untreatment S4 cvab004 S4
    cvab004 (S5) heart Tomo-seq baseline late embryo, 1.08dpf, untreatment S5 cvab004 S5
    GSE115140 (cancer) tumor ST cancer adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding GSM3167486 GSE115140 GSM3167486
    GSE120581 (tail replicate1) tail Geo-seq baseline late embryo, 2.3dpf, the tails of embryos, untreatment GSM3402086-GSM3402121 GSE120581 GSM3402086-GSM3402121
    GSE120581 (tail replicate2) tail Geo-seq baseline late embryo, 2.3dpf, the tails of embryos, untreatment GSM3402122-GSM3402157 GSE120581 GSM3402122-GSM3402157