Fish Spatial Expression Database

GENE ID: ENSDARG00000096666

Symbol	Location	Gene type	Genome version	Species
si:ch211-1f22.2	1: 56950797 ~ 56951369 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000096666 (si:ch211-1f22.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000005821	ncf2	7: 41329748 ~ 41338923 (-)
ENSDARG00000043795	arhgdia	3: 59899452 ~ 59947208 (+)
ENSDARG00000068177	pak2a	2: 36608387 ~ 36636866 (+)
ENSDARG00000017748	arhgap29b	2: 15128027 ~ 15198117 (+)
ENSDARG00000096666	si:ch211-1f22.2	1: 56950797 ~ 56951369 (-)
ENSDARG00000011845	chn2	16: 20318400 ~ 20492799 (-)
ENSDARG00000055400	si:dkey-56f14.7	16: 24626448 ~ 24646067 (+)
ENSDARG00000001968	dock5	8: 6651253 ~ 6825588 (-)
ENSDARG00000026350	wasb	8: 23560183 ~ 23578660 (-)
ENSDARG00000015149	wasa	8: 25629722 ~ 25643932 (+)
ENSDARG00000060766	pxnb	8: 3496204 ~ 3519152 (+)
ENSDARG00000087574	nox1	14: 41345175 ~ 41361847 (+)
ENSDARG00000055618	acta1b	13: 24279021 ~ 24284442 (+)
ENSDARG00000074121	dnmbp	12: 31638045 ~ 31710590 (+)
ENSDARG00000077762	si:rp71-79p20.2	23: 14590483 ~ 14731892 (+)
ENSDARG00000044718	vav2	21: 18021087 ~ 18262287 (-)
ENSDARG00000063527	elmo2	11: 88247 ~ 103157 (-)
ENSDARG00000032161	srgap2	11: 21405697 ~ 21586157 (-)
ENSDARG00000056664	arfip2b	10: 26205779 ~ 26225678 (-)
ENSDARG00000078430	tiam1a	10: 25572372 ~ 25657506 (-)
ENSDARG00000071692	prex2	24: 18948665 ~ 19207056 (+)
ENSDARG00000091457	NA	--
ENSDARG00000019258	NA	--
ENSDARG00000076562	NA	--
ENSDARG00000086908	NA	--
ENSDARG00000032493	NA	--
ENSDARG00000036012	NA	--
ENSDARG00000070062	NA	--
ENSDARG00000076059	NA	--
ENSDARG00000087701	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.