Fish Spatial Expression Database

GENE ID: ENSDARG00000070272

Symbol	Location	Gene type	Genome version	Species
casp10	9: 1313418 ~ 1357809 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000070272 (casp10), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000028192	cradd	4: 18383253 ~ 18416566 (-)
ENSDARG00000036057	tradd	7: 29115890 ~ 29124578 (+)
ENSDARG00000090965	ripk3	7: 1330501 ~ 1348640 (-)
ENSDARG00000030173	traf2a	5: 28755475 ~ 28767636 (-)
ENSDARG00000004392	hdr	5: 27404946 ~ 27415081 (+)
ENSDARG00000078378	unm_sa808	5: 5689476 ~ 5696173 (+)
ENSDARG00000025608	casp6b.1	3: 32953075 ~ 32958574 (-)
ENSDARG00000070368	casp6b.2	3: 32969204 ~ 32973554 (-)
ENSDARG00000089995	BX511080.1	3: 32066983 ~ 32071468 (-)
ENSDARG00000006677	ripk1l	2: 904362 ~ 920580 (+)
ENSDARG00000040252	atp1a1a.5	1: 1838164 ~ 1850104 (+)
ENSDARG00000070272	casp10	9: 1313418 ~ 1357809 (+)
ENSDARG00000074802	cflarb	9: 701452 ~ 704667 (-)
ENSDARG00000018569	tnfrsf1a	16: 17060758 ~ 17072561 (-)
ENSDARG00000046148	tnfaip8l2b	16: 29698565 ~ 29714540 (-)
ENSDARG00000022718	casp8ap2	20: 23947004 ~ 23956014 (+)
ENSDARG00000022418	faf1	8: 16274778 ~ 16406440 (-)
ENSDARG00000043586	fas	17: 23619924 ~ 23631411 (-)
ENSDARG00000075592	tnfaip8l2a	19: 373811 ~ 379750 (-)
ENSDARG00000063219	ubap2l	19: 7757682 ~ 7797952 (+)
ENSDARG00000055770	dffa	23: 28803007 ~ 28808480 (-)
ENSDARG00000061454	nrxn2a	21: 27636288 ~ 28340977 (-)
ENSDARG00000004451	tnfrsfa	21: 16172931 ~ 16219400 (-)
ENSDARG00000032746	tnfsf10l3	21: 30701902 ~ 30714665 (-)
ENSDARG00000055966	cflara	11: 30332959 ~ 30341431 (-)
ENSDARG00000088831	si:dkey-81j8.6	10: 20608676 ~ 20626795 (+)
ENSDARG00000057241	tnfsf10	24: 26932472 ~ 26937526 (+)
ENSDARG00000011520	NA	--
ENSDARG00000068099	NA	--
ENSDARG00000089319	NA	--
ENSDARG00000077190	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000070272

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.