Fish Spatial Expression Database

GENE ID: ENSDARG00000036968

Symbol	Location	Gene type	Genome version	Species
si:ch1073-416d2.3	17: 53292215 ~ 53295507 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000036968 (si:ch1073-416d2.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000045516	itih2	4: 25187912 ~ 25215968 (-)
ENSDARG00000090916	CR559930.1	5: 28824612 ~ 28826140 (+)
ENSDARG00000043002	vmo1a	3: 5403848 ~ 5413018 (-)
ENSDARG00000075648	sema5bb	6: 4033832 ~ 4146073 (+)
ENSDARG00000044365	angptl3	6: 32344197 ~ 32349153 (-)
ENSDARG00000038258	proca	2: 5456541 ~ 5475910 (-)
ENSDARG00000034862	f7	1: 119960 ~ 125246 (+)
ENSDARG00000088581	f10	1: 135903 ~ 142469 (+)
ENSDARG00000076900	prozb	1: 144284 ~ 151998 (+)
ENSDARG00000008969	fgb	1: 10051763 ~ 10059496 (+)
ENSDARG00000020741	fga	1: 10063501 ~ 10071539 (-)
ENSDARG00000055705	f5	9: 34127005 ~ 34147996 (+)
ENSDARG00000040898	gpa33b	9: 34307140 ~ 34308113 (-)
ENSDARG00000021208	serpind1	8: 1766206 ~ 1781733 (+)
ENSDARG00000036968	si:ch1073-416d2.3	17: 53292215 ~ 53295507 (+)
ENSDARG00000091748	tbx22	14: 9390850 ~ 9400556 (-)
ENSDARG00000010097	f9a	14: 32430982 ~ 32438200 (+)
ENSDARG00000016412	agt	13: 23988442 ~ 23995876 (+)
ENSDARG00000092858	si:ch1073-126c3.2	13: 20535159 ~ 20540790 (-)
ENSDARG00000086114	CR792417.1	13: 42552495 ~ 42560662 (-)
ENSDARG00000034168	serpini1	18: 5137241 ~ 5170417 (+)
ENSDARG00000057498	habp2	12: 31713239 ~ 31720066 (+)
ENSDARG00000045299	vmo1b	21: 1618181 ~ 1625976 (-)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000091077	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.