Fish Spatial Expression Database

GENE ID: ENSDARG00000013393

Symbol	Location	Gene type	Genome version	Species
guca1b	23: 19227296 ~ 19230627 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000013393 (guca1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000010454	guca1a	4: 22343093 ~ 22350976 (+)
ENSDARG00000018329	gc2	7: 51267478 ~ 51300277 (-)
ENSDARG00000058336	slc25a22b	7: 12976173 ~ 12999913 (+)
ENSDARG00000004051	CR354540.1	7: 58270474 ~ 58289847 (-)
ENSDARG00000060374	ttll11	5: 33611951 ~ 33668960 (+)
ENSDARG00000035253	npr3	5: 41260478 ~ 41307550 (-)
ENSDARG00000019752	rom1a	5: 67126774 ~ 67145505 (-)
ENSDARG00000026820	gucy2d	5: 38123633 ~ 38161033 (-)
ENSDARG00000020187	NA	6: 13993500 ~ 14010554 (-)
ENSDARG00000044280	opn1mw2	6: 41186320 ~ 41189460 (+)
ENSDARG00000039328	ccndbp1	6: 60043053 ~ 60049272 (-)
ENSDARG00000011886	pdca	2: 20882954 ~ 20890429 (-)
ENSDARG00000020602	grk7a	2: 16536453 ~ 16544343 (+)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000076790	crygm2d16	9: 22157282 ~ 22158325 (-)
ENSDARG00000025943	crygs3	9: 22351443 ~ 22366295 (+)
ENSDARG00000086425	prpf3	16: 9433738 ~ 9453591 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000026926	rom1b	14: 45675306 ~ 45701004 (+)
ENSDARG00000014840	prph2b	13: 3252950 ~ 3258772 (+)
ENSDARG00000038018	prph2a	12: 34896956 ~ 34901874 (+)
ENSDARG00000002576	cabp5a	12: 3848109 ~ 3861759 (+)
ENSDARG00000025504	gucy2f	15: 29362714 ~ 29381134 (+)
ENSDARG00000013393	guca1b	23: 19227296 ~ 19230627 (-)
ENSDARG00000067979	gtf3c5	21: 11367253 ~ 11383108 (+)
ENSDARG00000044629	guca1d	21: 22906479 ~ 22910530 (-)
ENSDARG00000089489	fam83e	11: 40103720 ~ 40128722 (-)
ENSDARG00000036428	NA	11: 40134856 ~ 40172295 (-)
ENSDARG00000060900	znf362a	11: 40175161 ~ 40204621 (-)
ENSDARG00000060901	trim62.1	11: 40331791 ~ 40418975 (-)
ENSDARG00000020718	slc25a22a	25: 4460039 ~ 4482506 (-)
ENSDARG00000011184	NA	--
ENSDARG00000078384	NA	--
ENSDARG00000014095	NA	--
ENSDARG00000086161	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
	GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000013393

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.