Fish Spatial Expression Database

GENE ID: ENSDARG00000010515

Symbol	Location	Gene type	Genome version	Species
dvl1a	23: 29966466 ~ 29992458 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000010515 (dvl1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000012818	csnk2a2a	7: 56751746 ~ 56766973 (-)
ENSDARG00000020053	nkd1	7: 37582281 ~ 37622370 (-)
ENSDARG00000035185	fzd9a	5: 56023186 ~ 56027776 (+)
ENSDARG00000054438	fzd2	3: 31621774 ~ 31624213 (+)
ENSDARG00000027589	fzd7b	6: 9703721 ~ 9707599 (-)
ENSDARG00000073837	senp2	6: 11397269 ~ 11415635 (+)
ENSDARG00000052468	gsk3bb	1: 49370549 ~ 49409549 (-)
ENSDARG00000004305	vangl1	9: 33009284 ~ 33055440 (+)
ENSDARG00000025420	fzd5	9: 28232522 ~ 28234444 (+)
ENSDARG00000017803	gsk3ba	9: 9577743 ~ 9671244 (-)
ENSDARG00000060004	fzd7a	9: 13352308 ~ 13355071 (-)
ENSDARG00000055271	nkd2a	16: 52999778 ~ 53054838 (+)
ENSDARG00000002082	csnk2a1	16: 31434524 ~ 31452507 (-)
ENSDARG00000040059	gbp	16: 40954481 ~ 40955839 (+)
ENSDARG00000009689	daam1b	20: 21815613 ~ 21994901 (-)
ENSDARG00000073996	prickle3	8: 49230948 ~ 49304602 (-)
ENSDARG00000020982	prickle2a	8: 54081819 ~ 54105734 (+)
ENSDARG00000015059	daam1a	17: 14467015 ~ 14591764 (-)
ENSDARG00000058692	fzd3b	17: 8498782 ~ 8570367 (-)
ENSDARG00000014673	fzd9b	18: 41648812 ~ 41650648 (-)
ENSDARG00000014222	zgc:86598	19: 3135271 ~ 3234924 (+)
ENSDARG00000010515	dvl1a	23: 29966466 ~ 29992458 (+)
ENSDARG00000037593	prickle2b	11: 19271557 ~ 19471758 (+)
ENSDARG00000063007	apc2	11: 7281240 ~ 7320211 (-)
ENSDARG00000091702	csnk2a4	11: 2434262 ~ 2446346 (+)
ENSDARG00000058868	apc	10: 1849874 ~ 1893095 (+)
ENSDARG00000045444	fzd8a	24: 4447635 ~ 4450238 (-)
ENSDARG00000040649	prickle1a	25: 314608 ~ 348784 (-)
ENSDARG00000013582	csnk2a2b	25: 13639232 ~ 13659249 (-)
ENSDARG00000014147	NA	--
ENSDARG00000026534	NA	--
ENSDARG00000041464	NA	--
ENSDARG00000077111	NA	--
ENSDARG00000042731	NA	--
ENSDARG00000079298	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE115140 (cancer)	tumor	ST	cancer	adult, the ST sample sections from zebrafish melanoma tumors were obtained by sectioning the entire tumor with its surrounding	GSM3167486	GSE115140

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, V to A)	embryo	baseline	shield stage, intact embryo, sectioned from vegetal to animal pole	GSM1448796	GSE59873
GSE59873 (shield, V to D)	embryo	baseline	shield stage, intact embryo, sectioned from ventral to dorsal end	GSM1448800	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873
GSE59873 (15 somite, T to H)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head	GSM1448817	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000010515

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.