Fish Spatial Expression Database

GENE ID: ENSDARG00000031848

Symbol	Location	Gene type	Genome version	Species
pparg	11: 609516 ~ 669558 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000031848 (pparg), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000036074	cebpa	7: 38084986 ~ 38087865 (-)
ENSDARG00000067829	ppargc1a	7: 70578985 ~ 70665965 (-)
ENSDARG00000035285	ncor1	5: 41878252 ~ 41996414 (-)
ENSDARG00000035127	rxrab	5: 64476118 ~ 64511428 (-)
ENSDARG00000061108	ep300b	3: 24996930 ~ 25055795 (-)
ENSDARG00000067607	srebf1	3: 62064805 ~ 62087346 (-)
ENSDARG00000002006	rxrbb	16: 18534834 ~ 18572875 (+)
ENSDARG00000004697	rxrgb	20: 33875256 ~ 33920055 (+)
ENSDARG00000018257	ncoa1	20: 36682051 ~ 36792710 (+)
ENSDARG00000000966	ncor2	8: 43379436 ~ 43574935 (-)
ENSDARG00000092738	si:ch211-263k4.2	8: 48095911 ~ 48242997 (+)
ENSDARG00000078324	si:ch211-263k4.2	8: 48480529 ~ 48541957 (+)
ENSDARG00000042725	cebpb	8: 28448267 ~ 28449782 (-)
ENSDARG00000037514	hdac3	14: 12178915 ~ 12205865 (+)
ENSDARG00000068064	sirt1	13: 50345345 ~ 50366950 (-)
ENSDARG00000023110	mapk7	12: 4220353 ~ 4238827 (+)
ENSDARG00000075340	med1	12: 15273304 ~ 15311999 (+)
ENSDARG00000078954	rxrba	19: 7249041 ~ 7274844 (-)
ENSDARG00000017299	fabp11a	19: 32166702 ~ 32169161 (+)
ENSDARG00000041243	setdb1a	19: 9111550 ~ 9147533 (+)
ENSDARG00000071272	ncoa6	23: 2703044 ~ 2726590 (+)
ENSDARG00000015902	stat6	23: 27078866 ~ 27123180 (-)
ENSDARG00000057737	rxraa	21: 17768174 ~ 17944808 (+)
ENSDARG00000088347	sp1	11: 19668 ~ 28747 (-)
ENSDARG00000031848	pparg	11: 609516 ~ 669558 (-)
ENSDARG00000017929	ncoa2	24: 14240196 ~ 14445137 (+)
ENSDARG00000062228	adipoqa	24: 26276805 ~ 26278852 (+)
ENSDARG00000059412	zgc:111976	24: 1023839 ~ 1036384 (+)
ENSDARG00000087697	lpl	22: 15624371 ~ 15630421 (+)
ENSDARG00000014859	NA	--
ENSDARG00000021907	NA	--
ENSDARG00000061308	NA	--
ENSDARG00000061724	NA	--
ENSDARG00000063102	NA	--
ENSDARG00000090113	NA	--
ENSDARG00000091659	NA	--
ENSDARG00000060976	NA	--
ENSDARG00000076430	NA	--

Expression

	Dataset ID	Tissue / organ	Technique	Experiment type	Sample description	Source dataset ID	Project ID
	GSE120581 (tail replicate1)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402086-GSM3402121	GSE120581
	GSE120581 (tail replicate2)	tail	Geo-seq	baseline	late embryo, 2.3dpf, the tails of embryos, untreatment	GSM3402122-GSM3402157	GSE120581

After clicking the magnifying glass button, the expression information will be displayed below.

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

one-cell stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE158849 (embryo replicate1)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812175	GSE158849
GSE158849 (embryo replicate2)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812176	GSE158849
GSE158849 (embryo replicate3)	embryo	baseline	one-cell stage, 0.3hpf, untreatment	GSM4812177	GSE158849

shield stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (shield, L to R)	embryo	baseline	shield stage, intact embryo, sectioned from left to right	GSM1448798	GSE59873
GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873
GSE59873 (shield, D to V, replicate)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end, replicate	GSM1448802	GSE59873

10 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
	GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, L to R)	embryo	baseline	15 somite stage, intact embryo, sectioned from left to right	GSM1448814	GSE59873
GSE59873 (15 somite, T to H, replicate)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned tail to head, replicate	GSM1448819	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000031848

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.