Fish Spatial Expression Database

GENE ID: ENSDARG00000058120

Symbol	Location	Gene type	Genome version	Species
NA	5: 22363015 ~ 22369916 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058120 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000058120	NA	5: 22363015 ~ 22369916 (-)
ENSDARG00000060415	arhgef28a	5: 34827614 ~ 34964830 (-)
ENSDARG00000062314	rasl10a	5: 24723405 ~ 24750286 (-)
ENSDARG00000059610	gpr146	3: 45687266 ~ 45717575 (+)
ENSDARG00000053449	pyya	3: 33340939 ~ 33344780 (+)
ENSDARG00000086332	bri3	3: 61391636 ~ 61398938 (+)
ENSDARG00000062030	gpr17	6: 28124393 ~ 28125412 (+)
ENSDARG00000094730	acbd7	16: 28596555 ~ 28599328 (+)
ENSDARG00000077427	gpr20	16: 30933249 ~ 30934319 (-)
ENSDARG00000073948	prok1	8: 24714733 ~ 24730185 (-)
ENSDARG00000055570	gpr61	8: 25173317 ~ 25177767 (+)
ENSDARG00000087601	gpr153	8: 46656170 ~ 46700278 (-)
ENSDARG00000070526	zc2hc1c	17: 50248152 ~ 50259782 (+)
ENSDARG00000058782	si:ch73-242m19.1	17: 6828550 ~ 6932061 (+)
ENSDARG00000077864	rasgrp3	17: 23146976 ~ 23201215 (+)
ENSDARG00000069954	kcnq5a	13: 27378857 ~ 27621246 (-)
ENSDARG00000041616	b3gnt9	18: 17511995 ~ 17513426 (-)
ENSDARG00000036222	npy	19: 20110699 ~ 20114149 (-)
ENSDARG00000025478	gipr	15: 28940352 ~ 28974120 (+)
ENSDARG00000059231	hephl1a	15: 2421432 ~ 2472933 (+)
ENSDARG00000097824	smco4	15: 41238247 ~ 41245962 (-)
ENSDARG00000079795	CABZ01033206.1	15: 449097 ~ 452347 (-)
ENSDARG00000036616	gpr182	23: 36653376 ~ 36655640 (+)
ENSDARG00000028661	cntfr	10: 13460130 ~ 13772861 (-)
ENSDARG00000003899	zdhhc23b	24: 21122836 ~ 21131607 (-)
ENSDARG00000044143	nol8	22: 10424995 ~ 10440688 (-)
ENSDARG00000045383	gpr22b	25: 3378135 ~ 3393705 (-)
ENSDARG00000016655	NA	--
ENSDARG00000042939	NA	--
ENSDARG00000059988	NA	--
ENSDARG00000063156	NA	--
ENSDARG00000069343	NA	--
ENSDARG00000078833	NA	--
ENSDARG00000076256	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

15 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000058120

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.