Fish Spatial Expression Database

GENE ID: ENSDARG00000004312

Symbol	Location	Gene type	Genome version	Species
--	--	--	Zv9	Danio rerio

Function

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004312 (--), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

GO/KEGG annotations of these genes are shown on the right.

Gene ID	Symbol	Location
ENSDARG00000089538	rnf166	7: 55223955 ~ 55292116 (-)
ENSDARG00000054597	cnot6l	5: 38786481 ~ 38824466 (-)
ENSDARG00000061066	c2cd2l	5: 30537640 ~ 30588549 (-)
ENSDARG00000024325	cert1a	5: 50912729 ~ 50970974 (+)
ENSDARG00000022772	NA	5: 24571750 ~ 24712405 (-)
ENSDARG00000093303	ifitm1	5: 33258289 ~ 33259079 (-)
ENSDARG00000060249	wdr44	5: 37316683 ~ 37341044 (-)
ENSDARG00000015610	tubg1	3: 37059803 ~ 37082618 (-)
ENSDARG00000045421	stard3nl	2: 31838442 ~ 31853345 (+)
ENSDARG00000058410	CR956623.1	2: 9918678 ~ 9941405 (+)
ENSDARG00000052419	ankrd12	2: 54696042 ~ 54786748 (+)
ENSDARG00000053746	CABZ01084566.1	2: 1202347 ~ 1217192 (+)
ENSDARG00000004634	osbp	1: 52662203 ~ 52699063 (+)
ENSDARG00000059835	zfyve27	1: 54889733 ~ 54907823 (+)
ENSDARG00000076328	osbpl11	9: 38524881 ~ 38556328 (+)
ENSDARG00000040482	osbpl3b	16: 21242491 ~ 21418775 (+)
ENSDARG00000041407	rmdn3	20: 46442282 ~ 46467280 (-)
ENSDARG00000039225	vps13a	8: 51992344 ~ 52091696 (-)
ENSDARG00000069298	osbpl9	8: 16615798 ~ 16675464 (-)
ENSDARG00000004952	rsad2	17: 35357451 ~ 35361322 (-)
ENSDARG00000079796	ldah	17: 30749251 ~ 30817230 (+)
ENSDARG00000093381	tgm2l	18: 18803539 ~ 18850302 (-)
ENSDARG00000052518	stx4	12: 20627164 ~ 20642019 (+)
ENSDARG00000031283	vamp1	19: 9460432 ~ 9472935 (-)
ENSDARG00000017809	stard3	19: 4968947 ~ 4985996 (+)
ENSDARG00000016088	rtn2a	15: 9010891 ~ 9031996 (-)
ENSDARG00000013830	osbpl2b	23: 9508538 ~ 9551967 (+)
ENSDARG00000053487	osbp2	10: 7916720 ~ 7974155 (-)
ENSDARG00000061235	alg5	10: 34984617 ~ 35002731 (-)
ENSDARG00000034883	acbd5a	24: 5915895 ~ 5933082 (-)
ENSDARG00000020128	NA	--
ENSDARG00000011281	NA	--
ENSDARG00000053356	NA	--
ENSDARG00000063542	NA	--
ENSDARG00000004312	NA	--
ENSDARG00000041100	NA	--

Expression

Tomo-seq

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.

shield stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (shield, R to L)	embryo	baseline	shield stage, intact embryo, sectioned from right to left	GSM1448799	GSE59873
	GSE59873 (shield, D to V)	embryo	baseline	shield stage, intact embryo, sectioned from dorsal to ventral end	GSM1448801	GSE59873

10 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (10 somite, A to P)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448803	GSE59873
GSE59873 (10 somite, A to P, replicate)	embryo	baseline	10 somite stage, intact embryo, sectioned from anterior to posterior end, replicate	GSM1448804	GSE59873
GSE59873 (10 somite, P to A)	embryo	baseline	10 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448805	GSE59873
GSE59873 (10 somite, V to D)	embryo	baseline	10 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448806	GSE59873
GSE59873 (10 somite, D to V)	embryo	baseline	10 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448807	GSE59873
GSE59873 (10 somite, L to R)	embryo	baseline	10 somite stage, intact embryo, sectioned from left to right	GSM1448808	GSE59873
GSE59873 (10 somite, R to L)	embryo	baseline	10 somite stage, intact embryo, sectioned from right to left	GSM1448809	GSE59873

15 somite stage

Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
GSE59873 (15 somite, A to P)	embryo	baseline	15 somite stage, intact embryo, sectioned from anterior to posterior end	GSM1448810	GSE59873
GSE59873 (15 somite, P to A)	embryo	baseline	15 somite stage, intact embryo, sectioned from posterior to anterior end	GSM1448811	GSE59873
GSE59873 (15 somite, V to D)	embryo	baseline	15 somite stage, intact embryo, sectioned from ventral to dorsal end	GSM1448812	GSE59873
GSE59873 (15 somite, D to V)	embryo	baseline	15 somite stage, intact embryo, sectioned from dorsal to ventral end	GSM1448813	GSE59873
GSE59873 (15 somite, R to L)	embryo	baseline	15 somite stage, intact embryo, sectioned from right to left	GSM1448815	GSE59873
GSE59873 (15 somite, H to T)	embryo	baseline	15 somite stage, deyolked embryo, straightened, sectioned head to tail	GSM1448816	GSE59873

18 somite stage

	Dataset ID	Tissue / organ	Experiment type	Sample description	Source dataset ID	Project ID
	GSE59873 (18 somite, T to H)	embryo	baseline	18 somite stage, deyolked embryo, head removed, straightened, sectioned tail to head	GSM1448820	GSE59873

After clicking the magnifying glass button, the expression information will be displayed below.

GENE ID: ENSDARG00000004312

Function

Expression

The folded tree shows the stages of samples in datasets covered by the FishSED. Click on the node of the fold tree to browse the details of the dataset. Check the dataset checkbox for dataset selection for expression profile visualization.

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences

The folded tree shows the stages of samples in datasets covered by the FishSED.

Click on the node of the fold tree to browse the details of the dataset.

Check the dataset checkbox for dataset selection for expression profile visualization.