Home
/
Search
/
Expression
/
Stereo-seq or Visium
ST
Geo-seq
Tomo-seq
BLAST
/
Browse
/
Help
USEAGE
Search
Expression
BLAST
Download
PROCESS
ACCESS
ABOUT US
USEAGE
Comprehensive search
In the home page, users can perform a comprehensive search based on ID.
A drop-down menu on the left helps users narrow down their queries. The optional categories are gene, project, dataset.
The examples of detail page are shown below.
Advanced search
In the search page, users can perform a advanced search for gene, project, or dataset.
Users can perform a conditional search to narrow down the target.
The examples of detail page are shown above.
Expression
In the expression page, users can select interested datasets and genes for visualization.
Users can input multiple genes and set filtering parameters to obtain the expression profile information of these genes.
This is a result case.
BLAST
Users can paste sequences or upload files to query FishSED based on sequence similarity.
General search options provide a parameter named db, which allows users to perform similarity searches for one or all species in FishSED.
Other parameters are set by default for users, and the output format is tabular with comment lines, which is our most recommended.
Download
In the Browse page, FishSED provides data downloads for each dataset.
PROCESS
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图表导出菜单
GEO
GEO
Cardiovascular Research
Cardiovascular Research
CNGB
CNGB
Tomo-seq
Tomo-seq
Geo-seq
Geo-seq
ST
ST
Visium
Visium
Stereo-seq
Stereo-seq
embryo
embryo
heart
heart
tail
tail
tumor
tumor
baseline
baseline
regeneration
regeneration
cancer
cancer
spatial
expression
profile
spatial
expression
profile
ACCESS
ABOUT US
INSTITUTE
Chinese Academy
of Sciences
Institute of
Hydrobiology
Lab of Aquatic
Bioinformatics
CONTACT US
(
Xia,Xiao-Qin,PhD
)
xqxia@ihb.ac.cn
mjshi@ihb.ac.cn
1229748942@qq.com
782264766@qq.com
copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences
