XLOC_010018


Basic Information

Item Value
gene id XLOC_010018
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29721627 ~ 29813252 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021721
CGCCCTCTAGTGCTGGCATAGTATCATCGGGCAGATCTGCAGCAGTGGATTTGCCCTCAGCCTGCTTCTCATTTGGGGTGTTCAGGTGTGATGGGGAATGTTTATTGTTGGTGCAAGAGGAActcaaagaaaaagaaaggaaacatagaagaaaaaaaaaactgttcagacATGATATTTTGGATGATTTGGAGGATGCTGGACTGAAAGATGCAAGGTTAAGGCCTGGTGAAATAATTGTCCGGTAATTTGGAAGACGAGGAATATGAAGAACCCTCTGCCAAACCtcctgaagtaaaacgctgtc
>TCONS_00021722
CTGCAGCAGTGGATTTGCCCTCAGCCTGCTTCTCATTTGGGGTGTTCAGGTGTGATGGGGAATGTTTATTGTTGGTGCAAGAGGAActcaaagaaaaagaaaggaaacatagaagaaaaaaaaaactgttcagacATGATATTTTGGATGATTTGGAGGATGCTGGACTGAAAGATGCAAGGTTAAGGCCTGGTGAAATAATTGTCCGcCTCATTAAACGGAGGCTGAAGCTACTTCACACTCCCTCTGCTGTTCATCCCTTCCGTCGCCAAAAACCCTCTCATCTGAAAAAAATACTAGGATGGGAAGAGAGGGATAAGATACAGCCGCAGTCGTGCCAGGCAGGATGGAACCGTCTGCCAAAAGGGGTCCGGCATCAAAGAGACCCATGAGGAGAACGCTCACTCCTGCCAACAAAAGACGGAgctggagaaagagagagtggATTTCTTTGAAAGGTAACCATACAATAACATTATTAAGACTGCTGGCTATGTTCAACCTTTAAGTT
>TCONS_00021723
CTGCAGCAGTGGATTTGCCCTCAGCCTGCTTCTCATTTGGGGTGTTCAGGTGTGATGGGGAATGTTTATTGTTGGTGCAAGAGGAActcaaagaaaaagaaaggaaacatagaagaaaaaaaaaactgttcagacATGATATTTTGGATGATTTGGAGGATGCTGGACTGAAAGATGCAAGGTTAAGGCCTGGTGAAATAATTGTCCGGTAATTTGGAAGACGAGGAATATGAAGAACCCTCTGCCAAACCtcctgaagtaaaacgctgtcaTCTACAGcCTCATTAAACGGAGGCTGAAGCTACTTCACACTCCCTCTGCTGTTCATCCCTTCCGTCGCCAAAAACCCTCTCATCTGAAAAAAATACTAGGATGGGAAGAGAGGGATAAGATACAGCCGCAGTCGTGCCAGGCAGGATGGAACCGTCTGCCAAAAGGGGTCCGGCATCAAAGAGACCCATGAGGAGAACGCTCACTCCTGCCAACAAAAGACGGAgctggagaaagagagagtggATTTCTTTGAAAGAAATGACACTAAGAAGTGCACGGCGGGGCCTAAGAGAGAGTATAAGAGCGGCTGACAGCCAGAAAGTCAACAAAACAGTGCACAGCCTGGTATGATCACCTGCCGACCCCTGTTCCTTCCCCCACGGGTCCATCTCGGCCCCTCATGGGTTATTGAGGCCCGTTTCCCTGCAGTCCTTTGCTCAATTGCATTGATAACAGTCTGACAGGCCACAGCAGAAGCCAGGAAACACTGTCCCTCCTTCTTCGCCCATTCAGCAAGGTCACCGATCCCCAACTGACAGCCCAACTGCCAGCTACAAACTGCCTCCAAATGAAAGAATTTCTCTGAAGTGTCGAGTACGCCTGTCTGCCAGCCTCTTTCTGAAAGGAGGAGAGGAAGCAGGCCACCACGGAGAAAAAGTCCAGGCATCCTTCCAGCAGAATTCAGTATCAACAAAGCAACATTTCTCTCCCCTGACCATAACCAACCTCTCTGAGTCAACATTTGCACAAAGCTGAACGTCCGATCCATATGTACCCATGGGATCGGGGTGAATGTCAACGTTATGGTTATGAGTTATTTATAAGATCACATAATACCTTATTCATTAAACATGAAGTCGTCGATCTGGAATGAGGAATCGGAAAAGTGCAGTTCCATATTAAGGGCCTGACATAAACCATACACTGAGTGATTTACACCTCAGCAGGTTTACAAATAGATGGACTAGGGCATGCTGGGATTGAGAACTGCAGTTTTTCAAAAAGGTATTTTTGTTTAGCTGTATTAAAAATGCATGACAAAAAAACTTGAGGAGTGGCTTTAACAGTGTTTCGTGACTGAGATGTTGCACATTTGACGATTTTAAATTTAGAGATGCTGGTACTGCTGTTTTGGAAACCAAACAGTGATGCTATATTCGCTCCCGGGGTTACAGGGGAAGCAAAATGCCATGctttaaaacattgatttttaATGATGCTATATGCACAATATATAACTGCGTCACTCTGGCAGTATTTGTAAAAACAGTTGGTTGACTCACTCACTTTTATATGCCTCTGCCAATGCGTTGATGAAATCAACAGTTGGATGTGGCAACACTTTCttcaattaaacaaaaacaaaactgaagtCTGAAAACCGAAGTTACATTTgggaacaaagatgaggttctcaaagTCAATGTGTATTGGCTCTAGGGGTCAAACTAAAAAAATCAAGTCTAGAATCTAGAGTCTGCTATGATTCTAGAGCCAGATCTTATGCTAAGTTCagaatgaatgatttttaaatgAGTCACAAATTGGCGTAAgtgggtttcacactgcatgactttacaataagaAATATTGCTGACAACTTTGTCTTGGTCTGCAAACTATGTCTCATAAGCAAACACCCacaagaagtgacatggaaacaacgtgatccaaatatttagcatgccaaatatctgacGGGTATTGGCAACTCATTTGTGATTCTGTtagattgcgtctttgatagttcacactttGTTTTGATTATTACTTGCCTGAACAAGCACttatttgcctgtgatttcaggcatttgcctgcg
>TCONS_00021724
gTTGTAGTCTCCATTTCAAATTGGATGACtataaagaaaatgttttagGCAATATGGAGACTATAAAACTGTCTGAATTTGTAATTTTGTCAGGTAATTTGGAAGACGAGGAATATGAAGAACCCTCTGCCAAACCtcctgaagtaaaacgctgtcaTCTACAGAATCCCCACCTCGATGTCTGTGTTGTAAAACTGTCGGCCCACCTGAGAGAGCTGCCCTACAGAGAAACCACAACACGCGCTGCTTGAATTTTAAACAGGTTATGGCTGCAAATGCTCTGCTTTTATAGCGTAAGATCCAGTCAAACATCATTGGGCCATATGTGATTGTGAACTTGAATTTGAGATAATTATTTGATCTCTCATTTCTCTCAAGAAATCTATAATGCGAACAGAAAGCATGTGTGCAAAGGTGTTGTTCTTATTCTGTAAATTTAGTAACTGTTCAAATagtttaaagtccccatgaaccggaagctgcgaaACTGCACTgaagtgtagttcagttttaagAGTTTAAGTTCAGATCAGTTCAGTAAGGTTAATAGAGTCcaaacaatgaagagcaaatccatcgatgcgcagctctacagatcctgaaccatgtaAGCCAGTGTTGACAGCAGctaggaaaaaaaatcacaaattggcgaaagtgaagaattaaaaaacctcaagagaaacaaggctcagttgggcacgaccatttctcctatggccaaacgtcttgtgcagagctgcagtctaggcaccagaggctggagaatgctaAACCTCatcgaagacttgtctgtccctggagcgtcacaagaaccagtctcatgctctccactcctccaagaccaccactgcagctgctcaggatacggcctggtccaggattatggaaaacTTGGGATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021721 False 307 lncRNA 0.44 2 29721627 29730138
TCONS_00021722 False 511 lncRNA 0.45 2 29721663 29808897
TCONS_00021723 False 2093 lncRNA 0.43 5 29721663 29813252
TCONS_00021724 True 902 lncRNA 0.42 2 29729983 29738428

Neighbor

gene id symbol gene type direction distance location
XLOC_010017 lysmd1 coding upstream 24838 29690708 ~ 29696789 (+)
XLOC_010016 tmod4 coding upstream 36769 29650698 ~ 29684858 (+)
XLOC_010015 vps72b coding upstream 73889 29630965 ~ 29647738 (+)
XLOC_010014 NA coding upstream 120959 29591119 ~ 29600668 (+)
XLOC_010013 mcl1b coding upstream 133658 29586004 ~ 29587969 (+)
XLOC_010019 AL928927.1 coding downstream 90392 29903644 ~ 29908970 (+)
XLOC_010020 sema6e coding downstream 189353 30002605 ~ 30271444 (+)
XLOC_010021 FP103008.1 coding downstream 267291 30080543 ~ 30080661 (+)
XLOC_010022 LO017848.1 coding downstream 488287 30301539 ~ 30306358 (+)
XLOC_010023 tmem79b coding downstream 502925 30316177 ~ 30326055 (+)
XLOC_010006 NA non-coding upstream 470779 29245880 ~ 29250848 (+)
XLOC_010005 NA non-coding upstream 490780 29211362 ~ 29230847 (+)
XLOC_009994 NA non-coding upstream 1054294 28660395 ~ 28667333 (+)
XLOC_009989 CR936250.1 non-coding upstream 1333464 28388046 ~ 28388163 (+)
XLOC_010024 NA non-coding downstream 516611 30329863 ~ 30330881 (+)
XLOC_010029 BX510336.1 non-coding downstream 1157249 30970501 ~ 30971157 (+)
XLOC_010030 NA non-coding downstream 1277746 31090998 ~ 31094580 (+)

Expression


Co-expression Network