XLOC_010043 (tmc4)


Basic Information

Item Value
gene id XLOC_010043
gene name tmc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32029090 ~ 32050153 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019974
GGAATTTGCCTCTGTAACTATGCACTACTGAGTACTGCTATTTTGGTATTGTGTTGTTTGTCGTCTTCATTTTATGTGGTGTCCATCTGATTTCTGATGGAGCTAAGAGAATTCAACGATGTAGTACATCCACCTCCAGACTACCCTAGTCCCGATGTCTCCCACCATTCCCTGAGGTTACGGACAGTTGCGGCTCCGGCTCCTGCTCAGCAGAGCAGCGGAGTTCAGTTTGACTGGGCTTCTCCTCCTCCTGAAGATGCTGAAGACTCCAGTGAAACACGTAACCTTCGCGAGCTGCCGCTGCACATGAGTCTAAAGAGAGCAGTAAGGCAGGTGCAGCAGATGAGAGTTCCAGTTGTGTCCAGCTCTTGGAATATTAAACATTCACAGACATTTCGGCGTTTCTGTGAGGTGGCCAAAAATATTCTCAGCTATTTTGTTTTGTGGAAGAGGGGGATCCAAAGAATAGGAGGTCACTTTGGTGGAGGAGTCCAGTCCTACTTTCTATTCCTGAGATTTCTGGTGATTCTCAACTTTCTGTCCTCTTTGTTAATCGCAGCGTTTGTGCTCATTCCCAGCATTGTGTTTCGCTCCTTGAACTTCAACTCCACCTCCAACATCACTATAGTCAACACAACAGGTTTAGAGACCTGCATGCAGTATGATCCAAAACCTGATGCTCTTATGGTGTTCTTCAACTACTTTCTGGACCTGGTTTCAGGCACGGGTTTTATGGAATATTCATACCTTTTTTATGgctattataataatacaatgatTGAAAGCGATGGCTTCTCTTACAACATCCCTCTGGCCTACCTGTTGACAGCAGCTTTCTACTTCCTCTTCTGCTTCTTTTGTATAATTATTAGAATGGGTGGTACGGCTCGTGTTGTTGTAGAGACGGGTGCAGGAGCAGCCGGGGGTTACTGTATGCTGGTGTTTACAGGATGGGATCACGGTCTTCAAGGAGACCGCGCTGTAAAGCTTAAACAAAACAACGTTCGCTACAGGTTACAGGTGGATTTAGAAGAGGAGAGGCTTAAAAAGAAGGCTGCCTCGCTGACTTTGGGCCAAACAGTCTCTCTCTATGCTCTTCGAATTTTCCTTAATCTAATAGTCTTAACACTCATCGTTGCAACCTTCTTTGGCATTGCTAAGGCAACACAGTTCAGCCAGTCTATGAAAACAACAGGATTTACGGGGCTACTGCTGCAGTACTTACCCTCCATGGTCATAACAGCAAGCAATTTTGTGGTGCCTTTACTCTGTGACAAGATTGCATTACTGGAAAAGTATTCCCCCAGTACCACGGTCATCCTAGCCTTGCTCAGGGCAGTGTTCTTGCGTTTGGTCAGTTTGGGTGTTTTGCTGTACACTCTATGGGAGCAGATAACCTGTAAAGGAGAGATTGGCAGTGATGACTGTAAACTCTGCGGTTATTATTATAACCAATACAAGTGCTGGGAGACGCGAGTTGGCCAGGAAATGTATAAATTAACTTTATTTGACTTCCTGATTACCGTTGCTACACTGATCCTGGTAGAGTTTCCACGCAGGATCGTGGTGGATCATTGCTCATGCAAACTGAGCCAGCTGGTGGGACGGCAAGAGTTTCTGGTTGCCCCGAATGTTCTTGCTCTCGTTTACAGTCAAACGGTGGTTTGGACTGGAGCTCTTTTCTGTCCATTGCTGCCATTTATCAACACCCTCAAATTCGTCATCTTTTATTATTGCAAAAAGATTACTCTCTTCCAAAACTGTCAACCGGCAACAAGAAACTTCAGATCCACCACCTCCAACTTCTTCTTTTTGTTGGTTCTGCTCTTTGGATGGATGTTGGCCAGTGTGGTTCTGCTTTACAGTGTTGCTAAGATCCATCCATCATATGGCTGCGGCCCTTTCCGTCTTGACCCAACTATGTGGGATGCTGTACCACAAGCTGTTAACATGCTAAGCACCACTAGTAGAGCTTTCCTGTTTTACATCGGCTCCCAGAAATGCTCTATTCCACTCTTCATCTTCTCTTGCATCCTTCTGTGCTATGTGAGCGCATTAACGTCAGTCCATGGGAAAAGTGTAGCGCTGCTGAAATCTCAGTGTGCACTGGAACAGCGTGATAAGCAATTCCTGATCAGACAAATTGAGGAGCTGAATGCCACAATGCAGAAAGCAGAACATGAACCCAAGCTGCTAAATACAGAGAACGAGCCTTTTCAACACACAGCAGCTACACAGTGGAATCAACACAACAATTACGCTTTTGACCCCGATGAAGATCCAAGGCCGTATTAAGGCTTTAGTGCTGTATATCGCACCAATTCTAGTGTCTAAGTCAGATTTTTGCTTTTAATAAACAAGTGAGCGTATTTGATCAAAAGAGACAGAAAGGGGATTACAAATAGTGTTGAATAAATGCtaatcaaagaaaataaaaataagaccaAGGATTGGAGTAATGATGCTCAATACATTGGCATCACAGGAGTAAATTAATTCTAAAATAGACaatttactgtttttactgtgtATTTGATCAACTTAATGCGGTCTTGGTGAGCATAAGAATTTGTGCGTCATTCTTTTTGACCTCAACCCTCTCTGTGGtagtgtatatatgtttatatttatccAATATTATGCCTGTTTATTTGCACGTTTACTCATTTCATAATTTGCTTGAATTACTTTGAACATTTTGTCAAAGTGAACAAGTTTCTGTGATGTATATTAATGCACTTTATTTACAGCAGCAGGCCATATACGCTGTGCctccttaaaaataaaatcataattattCATAAACTCAA

Function

symbol description
tmc4 Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including TMC4 (transmembrane channel like 4).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7489 Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including TMC4 (transmembrane channel like 4).

Ensembl:

ensembl_id ENSDARG00000031757

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019974 True 2810 mRNA 0.43 16 32029090 32050153

Neighbor

gene id symbol gene type direction distance location
XLOC_010042 mboat7 coding upstream 2757 32014552 ~ 32026333 (+)
XLOC_010041 NA coding upstream 44031 31960908 ~ 31985059 (+)
XLOC_010040 phc1 coding upstream 68438 31942527 ~ 31960652 (+)
XLOC_010039 rps9 coding upstream 101568 31921812 ~ 31927522 (+)
XLOC_010038 atn1 coding upstream 160105 31853919 ~ 31868985 (+)
XLOC_010044 leng1 coding downstream 1419 32051572 ~ 32058276 (+)
XLOC_010045 si:dkey-40m6.8 coding downstream 9632 32059785 ~ 32080875 (+)
XLOC_010046 prpf31 coding downstream 32206 32082359 ~ 32090672 (+)
XLOC_010047 NA coding downstream 42559 32092712 ~ 32095684 (+)
XLOC_010048 sphk2 coding downstream 81415 32131568 ~ 32147182 (+)
XLOC_010035 CR855311.5 non-coding upstream 394495 31634470 ~ 31634595 (+)
XLOC_010031 NA non-coding upstream 893659 31121756 ~ 31135431 (+)
XLOC_010030 NA non-coding upstream 934510 31090998 ~ 31094580 (+)
XLOC_010029 BX510336.1 non-coding upstream 1057933 30970501 ~ 30971157 (+)
XLOC_010052 NA non-coding downstream 228846 32278999 ~ 32365571 (+)
XLOC_010053 CR533571.1 non-coding downstream 347354 32397507 ~ 32509458 (+)
XLOC_010055 CR848729.4 non-coding downstream 622667 32672820 ~ 32672936 (+)
XLOC_010060 NA non-coding downstream 1008746 33058899 ~ 33063159 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09354981_09368973 TMC4 coding CI01000027 null 9354981 ~ 9369462 (+)