CI01000027_09354981_09368973 (TMC4)


Basic Information

Item Value
gene id CI01000027_09354981_09368973
gene name TMC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9354981 ~ 9369462 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09354981_09368973.mRNA
ATGGAGCTAAGATCATTCAACAACCAAGTCCATCCAACTCCAGACTACCCTAGTCCTTATGGTTCCCAGCATTCATTGAGGTTACGGACAGTTCCAGCTCAAGATACCAGTGCGGTTCAGTTTGATTGGGCCTCCCCCCCTGAAGATGCTGAAGACTCTGATGAGCCTCGAAATCTCCGCGAGCTGCCGCTGCACATGGGCCTGAAGAGAGCAGTATGGCAGGTGCAACAGATGAGAGTTCCAGTTGTTTCTAGCTCTTGGAACATCAAGCAATCACAGACATTTCGCCGTTTCTGTGAGGTTGCCAAATACGTTCTCAGCTATTTTGTTCTGTGGAAAAGGGGAATCCAAAGGATAGGAGGTCACTTTGGTGGAGGAGTCCAATCCTACTTCCTGTTCCTGAGATTTCTTGTGATTCTCAACTTCCTGTCCTCCTTGTTAATCGCAGCATTTGTCCTCATTCCCAGCATTGTGTTTCGCTCCACGAACTCCATGTCTAACTCCACTATCCCTGCAATCAATCTAACCGGTAAAGATATATGCTTGCAGTATGATCCAAAACCTGATACCCTGATGGTGTTTTTCACATACTTTCTGGACCTGGTCTCAGGAACGGGGTTTATGGAGTATTCATACCTGTTCTATGGCTACTATAATAATTCAATGATTGAGAGTAAAGGCTTCTCTTACAACATCCCTCTGGCCTATCTGTTGACGGCAGCCTTCTACTTCCTCTTCTGCTTCATTTGTATGATTATTAGAATGGGCGGCACGGCTCGTGTTGCTGTAGTGACGGGTGGAGGAGCAGCAGGGAGTTACAGTGTGCTGGTGTTTACTGGATGGGATCACGGTCTCCAAGGAGACCGCGTAACAAAACTTAAACAAAACAATTTTCGCTATCGGTTACAGGTGGATCTAGAAGAGGAAAGAATTAAAAAGAAGGCTGCCTCCCTGACTTTGGGCCAAACAGTCTCTCTCTATGCGCTCCGTGTTTTCCTTAACATAGTTGTCTTAATACTCATTGGTGCAACTTTCTATGGCATTGCTGTGGCAACCCAGTTCAGCCAGTCTGAGAAAACATCAGGCTTTAAGGGGCTGCTGTTGCAATACTTACCCTCCATGGTCATAACAGCAAGCAATTTTGTGGTGCCTTTACTGTGTGACAAGATTGCATTACTGGAAAAGTATTCTCCCAGTACCACGGTCATCCTGGCCTTGCTACGAGCGGTCTTCCTGCGTTTGGTGAGTTTGGGTGTTTTGCTGTACACTCTATGGCAACAGATTACCTGTGAGGGAGAAATCAACAGCAAAAACTGTATACCCTGCAATTATTATTACGATCAATATAAGTGCTGGGAGACACGAGTTGGACAGGAAATGTATAAACTGACTCTTTTTGACTTCCTGATTACCATCGCAACACTAATCCTGGTAGAATTCCCACGCAGGATTGTGGTGGATCATTGCTCATGTAAACTGGCTCAGTTGGTGGGACGGCAAGAGTTTGTGGTTGCCCCAAATGTTCTTGCTCTAGTTTACAGTCAAACGGTGGTTTGGACTGGAGCTCTTTTCTGTCCATTGCTGCCATTCATCAACACCATCAAATTCATCCTCTTTTATTACTGCAAAAAGGTAACTCTCTTCCAGAACTGTCAACCGGCAACAAGAAACTTCCGATCCACCACCTCCAACTTCTTCTTCCTGTTGGTTCTGCTCTTCGGATGGATGTTGGCCAGCGTGGTTCTCCTTTACAGCTTGGCTAAGATCCATCCATCTTATGGCTGTGGGCCTTTCCGCTTTCACCAAACAATGTGGGAGGTTGTACCAGGAGCTGTCAAAATGCTAAACAACACCAGTGCAGAATTCCTGTTTTATGTTGGATCCCAGAATTTCTCTATACCACTCTTCATCTTCTCCTGTGTTCTCCTGTGCTATGTGAGCGCTTCAACATCTATCCACGGGAAAAGTGTAGCACTCCTGAAGTCCCAGTGTAAGCTGGAACAGCGTGACAAGCAATTCCTGGTTCGACAAATTGAAGAGCTGAATGCCACAATGCAGAAGGAACAACGTAAACCACAGCAGCCCCAGAGAGAGACTGAGCCCTTCTACCACACAGCAACACGGTGGAATCAACATGACAATTATGCATTTGACCCCGATGAAGACCCGAGGCCATATTAAGACTTTGATAAAGCGCAGTGTATGCTGGAATACAACCAATGATTGTTTACAGAAATACAACCAACGATAGTTTTAGTACCAGTAAAAAGTTCTGTCACAGGAATAAATTACATTTTAAAATATATTAAAATAGAAAAATATTTAAAATTGTAATATTTCATAATATTTGGTGAACATAAGAGACTTCTTTCAAAAACATTTTAAAATCTTACTGACACCATTTGAATTATAGTGTAGAAATGTTTATATGTAGGCTATACAAAATATGCATGTTTATGAGAAAATGAGTGTTTTGACACACAAAAACTTTTGTGATGGATAATGTAAATGTCCCAGGCTTTATTACGTTGTACCTCCTTAAGCATAAAATTCTAATTATTTTTTTTACTCAAGTCTTTGTTAATTTTGTATTCCATTCTTTTTCAAACCATGAAAACACAGAAAAAATGAGTACCTCTACTCAAACGGCTTCTATTTTGAAAACAAAAA

Function

symbol description
tmc4 Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to several human genes including TMC4 (transmembrane channel like 4).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09354981_09368973.mRNA True 2670 mRNA 0.43 16 9354981 9369462

Neighbor

gene id symbol gene type direction distance location
CI01000027_09349353_09352981 MBOAT7 coding upstream 1831 9349353 ~ 9353150 (+)
CI01000027_09308025_09316510 PHC1 coding upstream 38313 9307932 ~ 9316668 (+)
CI01000027_09294505_09295818 RPS9.L, BRAFLDRAFT_126921, RPS9 coding upstream 59096 9294002 ~ 9295885 (+)
CI01000027_09243269_09246171 NA coding upstream 108066 9243148 ~ 9246915 (+)
CI01000027_09235085_09240022 NA coding upstream 114959 9235085 ~ 9240022 (+)
CI01000027_09369991_09372314 NA coding downstream 529 9369991 ~ 9373307 (+)
CI01000027_09376781_09390767 LMTK3 coding downstream 7319 9376781 ~ 9391123 (+)
CI01000027_09392689_09396015 PRPF31, PRPF31.S coding downstream 23227 9392689 ~ 9396015 (+)
CI01000027_09398846_09400911 NA coding downstream 29384 9398846 ~ 9401795 (+)
CI01000027_09414743_09422093 SPHK2 coding downstream 43410 9412872 ~ 9422479 (+)
G143050 NA non-coding upstream 21102 9332701 ~ 9333879 (+)
G143045 NA non-coding upstream 48821 9305954 ~ 9306160 (+)
G143040 NA non-coding upstream 62335 9292221 ~ 9292646 (+)
G143039 NA non-coding upstream 63461 9291243 ~ 9291520 (+)
G143038 NA non-coding upstream 64338 9290413 ~ 9290643 (+)
G143009 NA non-coding downstream 35282 9404744 ~ 9406029 (+)
G143031 NA non-coding downstream 53460 9422922 ~ 9423148 (+)
G143004 NA non-coding downstream 53949 9423411 ~ 9424600 (+)
G143060 NA non-coding downstream 98361 9467823 ~ 9468042 (+)
G143062 NA non-coding downstream 101707 9471169 ~ 9472939 (+)
CI01000027_08255251_08264629 NA other upstream 1094155 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1322940 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1403039 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1883267 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2397214 6951132 ~ 6957767 (+)
G143033 NA other downstream 359353 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010043 tmc4 coding NC_007127.7 CM002900.2 32029090 ~ 32050153 (+)