CI01000027_09392689_09396015 (PRPF31, PRPF31.S)


Basic Information

Item Value
gene id CI01000027_09392689_09396015
gene name PRPF31, PRPF31.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9392689 ~ 9396015 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09392689_09396015.mRNA
ATGTCTTTAGCAGACGAGCTGCTTGCCGACTTGGAGGAGGCAGGAGAAGAAGAGGACGGGCTGTACCCCGGTGGAGAAGAGGGTGAGAGTGATGGAGAACCCGGCGAGAGACAAACTGGGGGTCTGGAGGACATACCCGAGGAGATGGAGGTGGATTACAGTGGGACGGAGAGTGTCACATCCATAGCAAAACTAAGACACAGCAAGCCATTTGCTGAAATCATGGATAAAATCGGTCAATATGTTGGAAATCAACGAAAGAATTCGGAAGTGTCTGGACCTGTTGAAGCAGACCCAGAATACAGACTCATTGTCGCCGCCAACAATCTGACAGTGGAAATAGACAATGAACTTAATATCATTCACAAGTTTGTTCGTGACAAGTACTCCAAAAGATTTCCTGAACTGGAGTCCCTTGTGCCAAATGCACTAGATTATATCAGAACTGTTAAGGAGCTGGGCAACAATCTCGAGAAGTGCAAAAACAACGAGACTCTCCAGCAGATCCTGACCAATGCTACTATCATGGTGGTCAGTGTCACCGCCTCAACAACACAAGGAACTATGCTTGGTGATGATGAGCTCCAGCGATTGGAGGAAGCGTGTGACATGGCCCTTGAGCTCAACCAATCAAAACACAGGATCTATGAATATGTGGAATCTAGGATGTCATTTATTGCTCCAAATCTTTCCATTATTGTCGGAGCTTCAACTGCTGCCAAGATCATGGGTGTTGCTGGTGGGCTGACTAACCTGTCTAAGATGCCTGCATGTAATCTGATGTTGCTGGGAGCTCAGCGGAGGACACTGTCTGGATTCAGCAGCACATCCCTGCTGCCCCATACAGGCTACATCTACCACTGTGATGTAGTGCAGTCACTGCCTCCAGATCTGAGGAGAAAAGCAGCTCGTCTGGTTGCAGCTAAATGCACTCTGGCTTCTCGTGTGGACAGTTTTCATGAGAGTTCTGATGGCAAGGTTGGCTATGATCTGAAGGAAGAGATTGAGCGAAAGTTTGATAAATGGCAGGAGCCCCCACCAGTCAAACAGGTGAAGCCTCTTCCAGCTCCCCTGGATGGACAGAGGAAGAAGAGAGGAGGAAGAAG

Function

symbol description
prpf31 Predicted to enable U4atac snRNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome and retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of nucleus. Is expressed in retina and retinal neural layer. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa 11. Orthologous to human PRPF31 (pre-mRNA processing factor 31).

GO:

id name namespace
GO:0071166 ribonucleoprotein complex localization biological_process

KEGG:

id description
K12844 PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09392689_09396015.mRNA True 1106 mRNA 0.48 9 9392689 9396015

Neighbor

gene id symbol gene type direction distance location
CI01000027_09376781_09390767 LMTK3 coding upstream 1566 9376781 ~ 9391123 (+)
CI01000027_09369991_09372314 NA coding upstream 19382 9369991 ~ 9373307 (+)
CI01000027_09354981_09368973 TMC4 coding upstream 23227 9354981 ~ 9369462 (+)
CI01000027_09349353_09352981 MBOAT7 coding upstream 39539 9349353 ~ 9353150 (+)
CI01000027_09308025_09316510 PHC1 coding upstream 76021 9307932 ~ 9316668 (+)
CI01000027_09398846_09400911 NA coding downstream 2831 9398846 ~ 9401795 (+)
CI01000027_09414743_09422093 SPHK2 coding downstream 16857 9412872 ~ 9422479 (+)
CI01000027_09424746_09432978 NA coding downstream 28731 9424746 ~ 9433471 (+)
CI01000027_09448387_09455263 NA coding downstream 51032 9447047 ~ 9455293 (+)
CI01000027_09459448_09462994 NA coding downstream 63433 9459448 ~ 9463100 (+)
G143050 NA non-coding upstream 58810 9332701 ~ 9333879 (+)
G143045 NA non-coding upstream 86529 9305954 ~ 9306160 (+)
G143040 NA non-coding upstream 100043 9292221 ~ 9292646 (+)
G143039 NA non-coding upstream 101169 9291243 ~ 9291520 (+)
G143038 NA non-coding upstream 102046 9290413 ~ 9290643 (+)
G143009 NA non-coding downstream 8729 9404744 ~ 9406029 (+)
G143031 NA non-coding downstream 26907 9422922 ~ 9423148 (+)
G143004 NA non-coding downstream 27396 9423411 ~ 9424600 (+)
G143060 NA non-coding downstream 71808 9467823 ~ 9468042 (+)
G143062 NA non-coding downstream 75154 9471169 ~ 9472939 (+)
CI01000027_08255251_08264629 NA other upstream 1131863 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1360648 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1440747 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1920975 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2434922 6951132 ~ 6957767 (+)
G143033 NA other downstream 332800 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010046 prpf31 coding NC_007127.7 CM002900.2 32082359 ~ 32090672 (+)