CI01000027_09448387_09455263


Basic Information

Item Value
gene id CI01000027_09448387_09455263
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9447047 ~ 9455293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09448387_09455263.mRNA
GTTTATAAACACTCAATTCCAGCAAGCTTTTTCACTTTCATCCTAAACTGTGCTCTGTGCTAACATGCTAACCGTGTTGTGCTAGCTTGGCATAAACGTCAAAAATAGTTAATTAAGCGCCCTGTTGCCTCATTCGCTCCACGAAAAGAAAACACCTTTACATCTTAGATAGTGTATAATTCTCACCCATTAGTCGTAGATTGGAGAGGGAAATGCTGGTCGTGTGTTTTTAAAATTCTCTCAAGACACTCCCGAGTTCCTCCAGCTGAGGGCAATATGGCGTCGACTGGTGGCGAAACATCACCTCCGCTGCTATTTCCGGTTTCCATGAGCGGCCTCATTCAATAAAATAAATGGGAATTGAAACGGGTTCTTCTTAAAGTCAACATATCTACCTCTGAAAAGGTACGTTGCATATAAATAGTGGTTTTGAGATAGTTTTAGAGTGGGTTTTTGTTGTTGTGCATGAAGTCAGTAGAAGAAGACTTTTACATGTTATATGTTATTATGTAGCAACCCGATTGTCCAGTTTTGTTGACAGAATCGACGCACAATGTCGCGTCTTGATAACATCTAGATTTCAGGTTAAGTAAAGTCATATAGCCGCATCTCAGAGTTTTAGCTGATAATGACATTTTAAATGCGTCGTTTACAAAAATTTACCAAGAAGCTAAGCATATCTGTCACGATTATGAGCTTCTGACTGTCGATTAATTGTAACACAAATAAATGCGATTATAATTTCCTTTATGGCTTTATAAACAAACATTGCACAGGAGTAGAATTACGTGAATTATACAAATTATATACAAATAATTGTTATTAATAGTATTTATATTAAAATATTAACAGACGTTTACCATATTTGTTTTTTTTCCCCAAAACTTTAGTCTTATTCCACTTGCCATTCACACTAAGGCTTTTTAAAACAAACAAAAAAAAAAACCCTGAATATTTCGTATTTTATAGTAATATATTAATTAAGGTTGTATTAAATATGATTATGCTGTTATGTCTGGTATTTTTATGTCATTCCTTCATTTTCTTTTGTAATATAAGTGCAGTATGATTAAATCCACAATGATTCATTTCTAAGGAAGAAACATTAAAATAATTGTGACAGGTCTGTACTGTTGTAAAATAAGAATAAATGAATAATAGATATCCTTTAGACAGTGTAAGAAGCTTTCAGGATCTTATCATTTTAATTGTTTTTGTTTTTTTGTCTTGATGGCAGTGGTTGTAAATTTGCCCCACTTTTATTGTACTAACAAAACCTGTAGTATCTATGAAATTTTGGCTGAAACTATTCTTCCGTTCGTTTCACCCAGCCTTGTGACATGCCTGTGTGTGACATCTGCTGTGAAGAGCTCCCATCTGAAGCAGAGATGAGAACCCATCTCCTCTTGGGTCACATGGAGAATGTAATGGCCTGCCCGTTCTGCTCTTTGTCCGGGGTCTCGTACGATGAGCTGAGCTTCCACATCAACACCGCACACATAGAAAAAGACTGCAACGACATGAATGCGACAGTGGTTGAGAGTGGAGAGCAAATCTCAAATGACTGGATTGCTAAAAGTCCAATTTCTACATGGACTTCCAGTGTGAAAAATACGCACAAGGTATCTCAAGCCTCACCCCTGTCATCTGGCCACCCTTCATCCTTTCGGGTAAACGGGATGGCCAGCCCGATTACGGGGACCACTCTTTCTCAGGAAACCTCGACTAGCTTGAAGAGTTCACCACCTGCAGCAGCCACAGCAAGTTGTGCGATAAAACTGGACAGAACTACACAAACACCCAGCACTAACAGCAGAAGAGAGAGAGAAGATGGCCATCGAAAATCAAAGCAGAAGCGTTTGTCCTCACCTATTAAAGGTGCTGGTCCTGATGTTGGCACTTCAACAGAAGCATCTACTACAAGCAATGGTAGATCAGGTGTGATACGTTATGAGTGTCCAATGTGTTCTTTGAGCTGTTCCAACAGCACCTCCCTGCAGGAGCATGTTGAGCTCCACCTGGAATATGGCTCAGCATCTGCAACAGGACATTCACCTGGAGACCTGACTCTGGCCAGGAAGCTTCAGGAGGAAGAGAAGCAAAAGTGGAGGGAGGTAGAGAGCAGACGGGAAGCTGAGGACTTTAAGAAGCTCCAGAAGCAGTTTGGGCTTGATAACAGTGGTGGTTATCGCAAGCAAATGGAGAGGAATATGGAGAGGGCTGTGTCTCGAGGTCAGATGGTTCCCGCAGAGTTCCACAGGAAAAGAGCAGAGATGCTTCAATCTCTAGCCTCCGGGGTGGATGATGGCAGAAGCAAAACATCAGGCCACAGTCGCTCAATTGTAGGAGTGGAACAGAAAGTAAATGGCAACCTGTCCCTGCTCCTCTTTGATCCGGCGTTTGCACCTGGGGAAATGAGGAAAGTGCTGTCGCAGGATACAGCAGCTTCTATATTACGCCGTATACGCAAATTCCCCGGTGGCCTAAAACACAGACAGTATCAAGTGGTCGCCGTAGAAGGGGTGCTAACACCTGAAGAGAAACAGGCGAAAGTCAAATCATTAGAGAACCTCACCTCCTTTCTCTGTGTCCTGACCAAATGCGTAATGTGCCAAAATACGCTTCCTGATTTAATCAAGGCAGCAGACCTGCAAGTCAAGGACAGACCGGAATCTCACGCTCACTCCAAAGAGAGACAGAGAGAGATGGCAGGTAAGTGAACCGCACAGCAAACTCTGATCAGGTAGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09448387_09455263.mRNA True 2750 mRNA 0.42 7 9447047 9455293

Neighbor

gene id symbol gene type direction distance location
CI01000027_09424746_09432978 NA coding upstream 13576 9424746 ~ 9433471 (+)
CI01000027_09414743_09422093 SPHK2 coding upstream 24568 9412872 ~ 9422479 (+)
CI01000027_09398846_09400911 NA coding upstream 45806 9398846 ~ 9401795 (+)
CI01000027_09392689_09396015 PRPF31, PRPF31.S coding upstream 51032 9392689 ~ 9396015 (+)
CI01000027_09376781_09390767 LMTK3 coding upstream 55924 9376781 ~ 9391123 (+)
CI01000027_09459448_09462994 NA coding downstream 4155 9459448 ~ 9463100 (+)
CI01000027_09484034_09501412 KLHL32 coding downstream 28741 9484034 ~ 9502255 (+)
CI01000027_09562530_09572606 NA coding downstream 107203 9562496 ~ 9572635 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding downstream 206230 9661523 ~ 9663857 (+)
CI01000027_09767653_09768743 NA coding downstream 312360 9767653 ~ 9769402 (+)
G143004 NA non-coding upstream 22447 9423411 ~ 9424600 (+)
G143031 NA non-coding upstream 23899 9422922 ~ 9423148 (+)
G143009 NA non-coding upstream 41018 9404744 ~ 9406029 (+)
G143060 NA non-coding downstream 12530 9467823 ~ 9468042 (+)
G143062 NA non-coding downstream 15876 9471169 ~ 9472939 (+)
G143064 NA non-coding downstream 18888 9474181 ~ 9474690 (+)
G143061 NA non-coding downstream 19716 9475009 ~ 9475610 (+)
G143066 NA non-coding downstream 21098 9476391 ~ 9478186 (+)
CI01000027_08255251_08264629 NA other upstream 1186221 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1415006 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1495105 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1975333 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2489280 6951132 ~ 6957767 (+)
G143033 NA other downstream 273522 9728815 ~ 9729551 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location