G143009


Basic Information

Item Value
gene id G143009
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9404744 ~ 9406029 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162483
GGGGTAGAGTGATAGAACTCAATAAACTGGGGCCATTATCCAGAGTTTGATTGGTTGATGAGCTTGAGGACGAGGAATGGCTGTTTTGTGATTGGCTGGCACTGCTGAGTGAGGAGTCTGGTGTGTTGTCTGCAACCACAGCACTGTAACTGGTTGCGCCGTTTTGTTTGAGGCCACTGGGGGGTCTTGCAGGCGCTACGTTTGTAACTCCTCCACTCGAGACAGAACTGCTTCCATTCCCACCCAATCCACTCTCTCCAGTTCCTCCTCCAGGTGTTGTGCCCACAGGGCTTACAGGTACCTGCGCAGACCCGTGGAGAGCTGTCTGCCCCGGTACCAGGTTCAAAATCCCTCCAGTTAGGGACCCGTGACCTGGACTGGACCCTAGCAAGCCCATACTTGCCCCTGTACCCGTACCGTTACTGGTCGCGCCTGTGCTTGCTGCCCCTGCACCTCCGCTCGGTACAGATATGCCAGAACTACCACTGCTGCTCCCCACTGAACCACTGGAAGCACTACCTGCTGTTCCACCTGCAGCTGCCTGGGCATAGGGGGCAGGGGTAGAGCCTGAGAGAAGACCTGGCATGGTGCTGAGAGAACTAGACATGCCTGCCATGCCCAGACCTGGCATCTGAGCCACACTACTGCTGCTGGTGACCGTCACACCCCCTTTCCCCAGGCCCAAACCCAGTCTAGAGCCCTCGACCCCAGGTACTGTTGAAGCCTGGGACTGGGAATTGGAAGTAACTGGGCCAGATGTGCTGGAACTGGGCAGAGAAGTAGTTGTGGAGGCAGGTAGCGTGGGGTGGCTAGGTGGGCTAGGTGTGTTGTTGGAGGGTACGGATGTCGAGGAGAGTTTGACCTGTGCTTGCTGTTGAGACTGAGAAGAATGCTGTTGCACTGCACTGCTAAAGCTTCCCAGCAGGTTGCTGCCCCCGGAGACGGCTGTGCAGGCCCCGACAACAGTAGCCATGGAAACCAGCGAAGAGGAGGAGGAGGAGGAGCCTGAGGAGGCGGATGAGGAGAAGGACGAGAGAGATGGGTTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162483 True 1049 lncRNA 0.58 3 9404744 9406029

Neighbor

gene id symbol gene type direction distance location
CI01000027_09398846_09400911 NA coding upstream 3503 9398846 ~ 9401795 (+)
CI01000027_09392689_09396015 PRPF31, PRPF31.S coding upstream 8729 9392689 ~ 9396015 (+)
CI01000027_09376781_09390767 LMTK3 coding upstream 13621 9376781 ~ 9391123 (+)
CI01000027_09369991_09372314 NA coding upstream 31437 9369991 ~ 9373307 (+)
CI01000027_09354981_09368973 TMC4 coding upstream 35282 9354981 ~ 9369462 (+)
CI01000027_09414743_09422093 SPHK2 coding downstream 6843 9412872 ~ 9422479 (+)
CI01000027_09424746_09432978 NA coding downstream 18717 9424746 ~ 9433471 (+)
CI01000027_09448387_09455263 NA coding downstream 41018 9447047 ~ 9455293 (+)
CI01000027_09459448_09462994 NA coding downstream 53419 9459448 ~ 9463100 (+)
CI01000027_09484034_09501412 KLHL32 coding downstream 78005 9484034 ~ 9502255 (+)
G143050 NA non-coding upstream 70865 9332701 ~ 9333879 (+)
G143045 NA non-coding upstream 98584 9305954 ~ 9306160 (+)
G143040 NA non-coding upstream 112098 9292221 ~ 9292646 (+)
G143039 NA non-coding upstream 113224 9291243 ~ 9291520 (+)
G143031 NA non-coding downstream 16893 9422922 ~ 9423148 (+)
G143004 NA non-coding downstream 17382 9423411 ~ 9424600 (+)
G143060 NA non-coding downstream 61794 9467823 ~ 9468042 (+)
G143062 NA non-coding downstream 65140 9471169 ~ 9472939 (+)
G143064 NA non-coding downstream 68152 9474181 ~ 9474690 (+)
CI01000027_08255251_08264629 NA other upstream 1143918 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1372703 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1452802 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 1933030 7468964 ~ 7471999 (+)
CI01000027_06951132_06956691 GLIPR2, GLIPR2L other upstream 2446977 6951132 ~ 6957767 (+)
G143033 NA other downstream 322786 9728815 ~ 9729551 (+)

Expression


Co-expression Network