CI01000057_02701515_02705729 (GLT8D1)


Basic Information

Item Value
gene id CI01000057_02701515_02705729
gene name GLT8D1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2700883 ~ 2705729 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02701515_02705729.mRNA
ATGACTGTACGCAGAGTGAATGTGGTTATTCTTGTGCTCCTTGCCATCGCCTTTTTAATTATTTTGCATCGAAATCTGCTCAATCTCAATGATTTCCTGAAGCAAGTGAATCCAGACACAGTGCCTGGGATGGCCCTGCCCTTTGAGACTGACTTCCTGTCGGATCATAAGGTCATCAGAGCAGGAGATGAGATCCCAGTTCTCATCACTGCTCCAGAGGAGAGGCTGGGAGCAGCTGTCACCGCCATGAACAGCATCTACCGCAACAGCAAAGCTAATGTAGTATTCAACATAGTGACTCTAAATGAGTCTGTGGTCCATCTCAGAACATGGTTGAGTAAGACTGACTTGAAACATAAAATTATCATTTTTGATCCGAAGATTCTGGCGGGGAAAATTTCTAATGATCTTCAGAAGGTGGAGGCAGTGAAGCCGTTGACCTTCGCCAGATTCTACATGCCAGTTTTCTTGCCGGATGCAGAGAAAGCAATTTACCTAGATGATGATGTAATTGTACAAGGGGACATTCGTGAGCTTTTCGACACCAGTCTTAAGTTTGGACATGCAGCAGCTTTCTCAGAGGACTGTGACTCCGCCTCAACTAAAGGCATGGTCAGAGGAGCCGGAAATCAGAACAGCTATATTGGTTTTCTGGACTTCAAAAAAGAGGCGATCAAGAAGCTTGGAATGAGAGCAAACACTTGCTCGTTCAATCCTGGAGTCTTTGTGGCCAATTTAACCGAGTGGAAGCAGCAGAATATCACCAGCCAGCTTGAGTTCTGGATGGAGCACAATGCCAAAGAGGACCTTTACAGTAAGACTTTAGCAGACAGCATCACAACGCCACCTATGCTCATTGTATTCTACAAGCAGCACTCGAACATTGATCCCATGTGGCATGTCCGACATCTCGGGGCAACGGGAGCGGGGAAACGGTATTCACCTCAGTTTGTGAATGCTGCTAAACTTCTCCATTGGAACGGACATTATAAACCATGGGGAAGAACCTCCTCTTTTTCTGACATTTGGGACAAATGGTACATACCAGATCCCACAGGTAAATTCCACCCAATCCGGAGACATGTTGAGGAAAAATAGACTGTGGCTTGGACTACATTTAAAAAAAAAAAAATAAATAAATAAATTACGCAAGTGCTTTGTGGAGGGACATTGGAACATTTGACTTTATTCAGGGGATGTCTGGAAGCAAAATATGGGGCTTTAAGAAACCTAGAAGTACCTAAGTTACTGGGACCAACATTGGAACGGAGCAACAGTAAAGAAGCGACATTCAACACCAATCAATGCACTACCTCAGCATTCATTGTCTAATTATAAAGTAATAACACTAAAACATTCATGATAAAGCTTCTAAATTTCCATTTTGTATACTACATCCATGCAAGTGTCTAGATTTTTTAAATGTTATAATCCTGAATATTTTGGGGTGGAATTGTGGACCCACCTCTTGCTTTTTTTTTTTTTTTGTGCAAAATGTCCATTTCATTATAAAATATTTTAGTCTGTTTCAGGGCTCAGACACAAACCTGTGACAACTAACATTTCAGAATTTCTTTCTTTGACACTACAGGAACCACTTTCGCCTTCTATAAATTGTTATATTTCTGTGGATGTTTCCCCCCCCCCCCACATGTCAGCTGTTACTGTTGAAGGGGAATATATGCTAATTTGTACAGAAAGGAAAGTGTTCTAACAAAGTATTGAATAAA

Function

symbol description
glt8d1 Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D1 (glycosyltransferase 8 domain containing 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02701515_02705729.mRNA True 1730 mRNA 0.42 9 2700883 2705729

Neighbor

gene id symbol gene type direction distance location
CI01000057_02656843_02688559 PBRM1 coding downstream 11351 2656843 ~ 2689532 (-)
CI01000057_02624690_02627558 GATA2 coding downstream 70661 2624461 ~ 2630222 (-)
CI01000057_02621058_02622618 NA coding downstream 78034 2620915 ~ 2622849 (-)
CI01000057_02457005_02470094 NA coding downstream 230789 2456813 ~ 2470094 (-)
CI01000057_02439034_02454810 NA coding downstream 246073 2437622 ~ 2454810 (-)
CI01000057_02710209_02720000 NEK4 coding upstream 4435 2710164 ~ 2721575 (-)
CI01000057_02807951_02821617 CCDC3B coding upstream 102037 2807766 ~ 2821793 (-)
CI01000057_02829879_02834139 NA coding upstream 124105 2829834 ~ 2834262 (-)
CI01000057_02838008_02838430 NA coding upstream 130980 2836677 ~ 2838785 (-)
CI01000057_02844117_02844398 NA coding upstream 138062 2843791 ~ 2846738 (-)
G245035 NA non-coding downstream 13018 2687650 ~ 2687865 (-)
G245034 NA non-coding downstream 13783 2686859 ~ 2687100 (-)
G245024 NA non-coding downstream 104366 2596206 ~ 2596517 (-)
G245016 NA non-coding downstream 123651 2576996 ~ 2577232 (-)
G245015 NA non-coding downstream 123994 2576453 ~ 2576889 (-)
G245069 NA non-coding upstream 145091 2850820 ~ 2869408 (-)
G245130 NA non-coding upstream 197336 2903065 ~ 2903273 (-)
G245996 NA non-coding upstream 285263 2990992 ~ 2991334 (-)
G245966 NA non-coding upstream 307534 3013263 ~ 3322256 (-)
CI01000057_01904867_01921400 NA other downstream 779462 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 895730 1801528 ~ 1806454 (-)
G244358 NA other downstream 2129855 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 1186006 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 2223015 4927533 ~ 4931420 (-)
G246780 NA other upstream 2505381 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 3217811 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location