CI01000057_02807951_02821617 (CCDC3B)


Basic Information

Item Value
gene id CI01000057_02807951_02821617
gene name CCDC3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2807766 ~ 2821793 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_02807951_02821617.mRNA
AGATAAACGGCCGTTTATATCAACGCGTATCATTCACTGCATTTGAGAGTTTGGATATTAGTGGTGTGCGTTTTACGCGGACTTGGATAAGTCTGTTTTAGAGGGATATCAGAGCGAACCGCTTGGAATTGCTATTATTAGAGGCAGTTTGAACGAGTAAAGTAAGGTTGCATGTCATGGGTTCTCTTCTGGCATTAATTTTGGCGCTCTCCCTGAGCGCATCATGGGGATGCCAACTGCCCCACGACTGGAGACCTCAGACGGAAGCGTGCCGCGCAGAGCTGGCGGAGATCATAGTTTTTGCCAAGGTGCTCGCCCTTCATAAGGAGTCTTACAGCGTGTACAACTACCTGCCGTGGCAGTACGACACGGATCTGTTCTTCTCCGCGGAGATCGAGCTGCTGTGCGATCAGGCATGGGGCAGCATGCTGGAGGTGCCAGCCGGATCCAGGTTCAATGTCAGCGGGTTGGGATATTTCCCCTGCTACTCGTACAGCGTCATGGAGAACAACTCCTACTATTTCTTTTTGAGTGAGAATGAAATCACATTGGCAGATGAACTTACAAAGGATGAGGTAGCTAACAGAGAACAGAAGATGGATGAAAACTACAGTATCATTCCTCACGGAGTCAACTTCCAGGACCCCATCTTCCCTGACACACCGGAGAACCACCGCATGTTTTCCAGCTTATTCCAGTTTTCCAACTGCACAGCTGGCACACAGGTTCACATGTACACCCCAGACTGGGAGGTCCAAGAGGACAACCGACTATGGTGCTCCAATGTGCAGAAGGCCTTATTTGAGGAGGAAGAGAAAGTCAAAAACCTCTCTCAGAAAGTGAAGATCCTGGAAAAGGCCAACAATCACCTGAGGGACAAGGTGAAGAACATGAAACGTCTCTTGAGGCAGGCCAAACAAGAGACCAAAGAGCCGGTTCAAAGCTTCAAACAGCTTCATGAAGCCAAACCAGAGTTACCCCATCCACAACAGGACACCACCCAGGACCAGAAGCCTCCTCTCAGGAAAAACCTGCCCAAAAAGCTCAAGAACTAAGAGCCGTTCCTGCACTGAAGGAAACTTGATTAAAATGATGGTGTATTGGCAGATCTAGATGATGGGGTCATAGGGAGTGCTGAGAGGTCATAGGGATCTATGAAGATAGTGTAGCCTTCAAAAGGTTCTCATGTGCAATGAACCTTCTACTGTGGATTATCCTTCAAAATGAATAGAAAAATAAA

Function

symbol description
ccdc3b Is expressed in head; immature eye; nervous system; pectoral fin; and skeletal muscle. Orthologous to human CCDC3 (coiled-coil domain containing 3).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_02807951_02821617.mRNA True 1240 mRNA 0.48 4 2807766 2821793

Neighbor

gene id symbol gene type direction distance location
CI01000057_02710209_02720000 NEK4 coding downstream 86191 2710164 ~ 2721575 (-)
CI01000057_02701515_02705729 GLT8D1 coding downstream 102037 2700883 ~ 2705729 (-)
CI01000057_02656843_02688559 PBRM1 coding downstream 118234 2656843 ~ 2689532 (-)
CI01000057_02624690_02627558 GATA2 coding downstream 177544 2624461 ~ 2630222 (-)
CI01000057_02621058_02622618 NA coding downstream 184917 2620915 ~ 2622849 (-)
CI01000057_02829879_02834139 NA coding upstream 8041 2829834 ~ 2834262 (-)
CI01000057_02838008_02838430 NA coding upstream 14916 2836677 ~ 2838785 (-)
CI01000057_02844117_02844398 NA coding upstream 21998 2843791 ~ 2846738 (-)
CI01000057_03027103_03027612 NA coding upstream 205287 3027080 ~ 3027851 (-)
CI01000057_03192667_03213688 NA coding upstream 370709 3192502 ~ 3213869 (-)
G245035 NA non-coding downstream 119901 2687650 ~ 2687865 (-)
G245034 NA non-coding downstream 120666 2686859 ~ 2687100 (-)
G245024 NA non-coding downstream 211249 2596206 ~ 2596517 (-)
G245016 NA non-coding downstream 230534 2576996 ~ 2577232 (-)
G245015 NA non-coding downstream 230877 2576453 ~ 2576889 (-)
G245069 NA non-coding upstream 29027 2850820 ~ 2869408 (-)
G245130 NA non-coding upstream 81272 2903065 ~ 2903273 (-)
G245996 NA non-coding upstream 169199 2990992 ~ 2991334 (-)
G245966 NA non-coding upstream 191470 3013263 ~ 3322256 (-)
CI01000057_01904867_01921400 NA other downstream 886345 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 1002613 1801528 ~ 1806454 (-)
G244358 NA other downstream 2236738 570530 ~ 571028 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 1069942 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 2106951 4927533 ~ 4931420 (-)
G246780 NA other upstream 2389317 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 3101747 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003857 ccdc3b coding NC_007122.7 CM002895.2 4148808 ~ 4175773 (-)
bowfin (Amia calva) AMCG00017162 LOC106565857,LOC105028386,LOC106583017,LOC105912203,LOC107706913 coding CM030122.1 CM030122.1 49265461 ~ 49278686 (+)