CI01000057_04657451_04663499 (NRAMP-BETA, SLC11A2, NRAMP-ALPHA)


Basic Information

Item Value
gene id CI01000057_04657451_04663499
gene name NRAMP-BETA, SLC11A2, NRAMP-ALPHA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4657262 ~ 4663499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04657451_04663499.mRNA
TATGTGCGTGTGGCTCCGGACCAGGGCGAGGTTCTGAAGGGCATGTTTCTGCCGTACTGCCAAGGCTGTGGACCAACGCAGCTGGAGCAGGCCGTCGGGATCGTGGGAGCCGTTATAATGCCTCATAACATCTATCTGCATTCTGCTCTCGTTAAGTCACGAGACATCGATCGAGCCAACAAAAGAGAGGTGAAAGAGGCCAACAAGTACTACTTCATCGAGTCCTCCATCGCGCTCTTCGTCTCCTTCCTCATCAATGTTTTTGTGGTGGCCGTCTTCGCCGAGGCCTTCTATGGCAAGACAAACATGGAAGTGGGCCAGAAGTGTAATCAGAGCGGAAGTCCTCACAGTGATCTCTTCCCAGCCAACAACGAAACACTTGAAGTCGACATCTACAAAGGGGGTGTGGTTTTGGGCTGTTTTTTTGGCCCCGCTGCGCTGTATATTTGGGCGATTGGGATCCTCGCGGCTGGACAGAGTTCAACCATGACTGGAACCTACTCTGGTCAGTTTGTGATGGAGGGTTTCCTGAACCTGCGCTGGTCTCGCTTCGCTCGCGTGTTGCTGACGCGCTCCATCGCCATATTACCCACTCTTCTGGTGGCCGTCTTTCAGGACGTGCAGCATCTCACCGGCATGAACGACTTCCTGAACGTGCTGCAGAGCATGCAGCTGCCGTTCGCTCTGATCCCCATCCTGACCTTCACCAGTTTGACGTCACTAATGAGCGATTTTGCCAACGGACTCGCGTGGAAGATCAGTGGCGGTGTGCTCATCCTGGTGGTGTGTGCCATCAACATGTACTTCGTGGTGGTGTACGTGACGGCTCTCAACAGCACCATCCTCTACGTCTTCTCCTCCTTAATCTCCATTGCCTACCTGAGCTTCGTCATCTATCTGGTCTGGCGCTGTCTGATCGCTCTCGGCGTGTCTCGTCTGGATTTCAGAGGAACGGTTCAGCACCCACCAGCCGTTCTCATCGACGAACAGCCAGAGTTCGATTCCTGAACCGAACACATGATCACTTCCAAAGTATGAACATTTGTTCTTCTGACGTGAGGAACGTCCTTACTGTGACAAACAGTAAAATCCAAATATGTTTCCTTTCCTGATCCGTGGCTCTTTTCCTTTGCCACGTTTTATAGATCTACTATTGTAGGTCCGTCAGAACTGATAGTGTAGATCAACTGAAATAAA

Function

symbol description
slc11a2 Enables iron ion transmembrane transporter activity. Acts upstream of or within several processes, including embryonic hemopoiesis; hemoglobin biosynthetic process; and response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; lens; solid lens vesicle; and ventral mesoderm. Human ortholog(s) of this gene implicated in Parkinson's disease; amyotrophic lateral sclerosis; anemia; and hypochromic anemia. Orthologous to human SLC11A2 (solute carrier family 11 member 2).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K12347 SLC11A1, NRAMP1; natural resistance-associated macrophage protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04657451_04663499.mRNA True 1197 mRNA 0.52 8 4657262 4663499

Neighbor

gene id symbol gene type direction distance location
CI01000057_04647822_04649004 NPFFL coding downstream 8258 4647773 ~ 4649004 (-)
CI01000057_04635274_04644405 NA coding downstream 12857 4635217 ~ 4644405 (-)
CI01000057_04597494_04597814 NA coding downstream 59448 4597415 ~ 4597814 (-)
CI01000057_04583096_04590861 ISY1 coding downstream 66401 4582911 ~ 4590861 (-)
CI01000057_04560576_04573644 NA coding downstream 83618 4559640 ~ 4573644 (-)
CI01000057_04718947_04721031 NA coding upstream 55419 4718918 ~ 4721076 (-)
CI01000057_04728914_04731946 NA coding upstream 65373 4728872 ~ 4733723 (-)
CI01000057_04743808_04746558 NA coding upstream 79907 4743406 ~ 4748097 (-)
CI01000057_04787300_04788191 NA coding upstream 123213 4786712 ~ 4788191 (-)
CI01000057_04794580_04834143 COL2A1 coding upstream 130018 4793517 ~ 4834429 (-)
G246600 NA non-coding downstream 1823 4654977 ~ 4655439 (-)
G246632 NA non-coding downstream 58968 4597952 ~ 4598294 (-)
G246587 NA non-coding downstream 97825 4557111 ~ 4559437 (-)
G246603 NA non-coding downstream 100252 4556726 ~ 4557010 (-)
G246597 NA non-coding downstream 122894 4532796 ~ 4534368 (-)
G246658 NA non-coding upstream 50592 4714091 ~ 4714359 (-)
G246662 NA non-coding upstream 61017 4724516 ~ 4725178 (-)
G246669 NA non-coding upstream 86316 4749815 ~ 4750141 (-)
G246676 NA non-coding upstream 117267 4780766 ~ 4781052 (-)
G246691 NA non-coding upstream 138173 4801672 ~ 4804379 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 759571 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2735841 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2852109 1801528 ~ 1806454 (-)
G244358 NA other downstream 4086234 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 265245 4927533 ~ 4931420 (-)
G246780 NA other upstream 547611 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1260041 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003785 slc11a2 coding NC_007122.7 CM002895.2 281833 ~ 287670 (-)
bowfin (Amia calva) AMCG00008840 NA coding CM030126.1 CM030126.1 13074080 ~ 13097915 (+)