CI01000057_04728914_04731946


Basic Information

Item Value
gene id CI01000057_04728914_04731946
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4728872 ~ 4733723 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04728914_04731946.mRNA
ACTGTTAATGTGTAAAAATGAATTACAAAATATACACAAAAGGATTAGATTTTCTAAATTAAAAAAAAAAAACAATCTTTTTCTGCTTAAATATCAAATCCATGGAAGAGGCCAAATTATATCTAGTGACACTAATATATAGCCTTATAATGTGAGAATTAATAACAAATATTTGAGTCATTAGATGAAGATGGACTTCTACACATTAAAAACTCAACCATCAATTTCATGTAATTCTTCAACCCTCATGTACCGTTGTGGGTCAGTTTGACCTGTTTTGATTTTGAGTTGTCGGAAACATCATTTAACCTGTGTTTTTTTTTCTTTCCCCCCTTTTTTTGTGACTTTTTTCTCATTTAGGGTCATGAACATGCATGCAAAGTTTGCAGAAATTTTATAAGTTCTTACTGTTTGTAGGTCAATTTGACCTATATAGACTACAGGCAAAACAAGTAAAAAATGTCAATTTTGGTCAAATTTGAGGTTTTCACAACAAAACGAGTTCATTAAGCCCCCATCTAGCCATCCCAATGCTTCAAATAGCAATTAAACATCTAAAAGTATCTATATTTGTATGTTTTCTGAAAGGAGTATCTTTCCTTTGTCCATGAAAAATGCCGTTTTTCACTGCTCGCTTCTCAACGAAAGCACTTTTGGACTATCGTTTTAAAACGCAGCATTCCAACTTTGTGAATATTCATAGCGAATTCTAGATGGTATGAGAACCAATGAAATGTGATTTTCAAACTTATGCTGACAGATCAAGCGTGTGTGCACAAAGACGCCTCAGACAGTGTGCAATCCCGATATACACATATACACATTACAGTATTTCAAAATATCTGTCTTGGCGAGTGTTCATGCAAACATTATCTGCTATGTCTTAAGTGAATGTTTGGTTAACTGTTGGGGAAAAACATCAGATGTGTAACATTATATTACTGTAGATACGTGTAGTACAATAGGTATTAACATATAGGGTGTCTGTTTCATTAATGTTAATTGTTTTAGTCATGCAATTGTGGAATCATGCAAAAAAGTTCAATTTTTTTTTTTTCCCTGTAGACATGGGTTTTGACTTTGTTTGATTGAATCCGATATTTAGTGATAATGTAGCATAATAAGAGATTTGTAAGCAATTTATTGGAGGCCAGTCATTTTTGACCGGGAACACCACAAGTGTTACAATGTGGGAAAAAACCCACAAAATTTTTTAAAAATTATCAAAAAAATTGGGGAAGTTGTTAGACTCTGGGTGAGTAAAGTCAGTAAATTTTAGTCCAATACGATAACATTAACTTGCATTTTCGGGTACAGGAAAATCCTCTCTGGGTCAAAATGACCTGAACACAACCTGAGGGTTAAAAAAACTTAGGTCTCCTTACTTTCATAAAGTTAATTATGGCAAGTTGAACATACTTAATATTCTACGTAAATACAACTTAACTGAGTCAGTGGGAAAAAAAAGATAACTCAAAAAGTTGTGAATTAATTTTTAGAATTTTTTTTTTTTACAGTGCAGGTAAAACCAAACACTGATACTGAATATATCTTATAAAGAAAATAAATAGAGATTATATGAATCCTTTGATTGATGTTATGATGAGTGAAGTATTAAAACTACTTACATGATGTAAGGATGAGCTATTTTGCATGTATATCCTTGCATGAATTTATAACATGTAAAGATGTATAACATAGAAATATAAAAATATAATATAAAATGGTAATCACTGTGGAAAACATTTCACATCCTGTTCTACAAACACACAGAGGCATGAAAGGATCCAGTTCTGCTGAATCTGCTCAATGTCACACACAAGCAGCCCTGCAGGAGGAGACTGGAGACCTGCAGAAACCAGTAAAGAATGAAATACAGACAGTCAAAGACCGGCTCAAATCCAGCATGAAGATAAAATATGAGAGATTATTTGAAGGAACCAAACTACAAGAGAATGAAACTCTCCTGAACAGGATCTACACACAGCTTTACATCATAGAGGGAGAGAGAAAAGGAGTGAATGAAGAACATGAGGTTTTACAGATGGAAAAATCAGCCAGAACACAACACTCACAAGACACTCCAATCGAATGCAATGACATCTTTAAAGCCTCACCTGAACCAGGATGTGAGGAGAAACACCAAATCAAGACTGTTCTTACTAAAGGCATCGCTGGAATCGGAAAAACCGTCTCTGTGCAGAAGTTCATTCTGGACTGGGCCGAAGGAAAAGCCAATCAGGATGTGGATTTCATGTTTGTGCTTTCATTTAGAGAGCTGAACTTGATCCGAGATCATCAGTACAGTCTTCACAGACTTCTGTTGGACTTTCATCCTGAACTTCAAGATCTGGACTTAAAGATTTATGAGGAGTGTAAAGTTGTGTTAATCTTGGATGGTCTGGATGAAAGCAGAATGACACTGAAGTTTTCAGACGCTCAGAAAGTTTCTAATGTGACTGAGACTTCATCTGTGGGTGTGTTGATGTCAAAGCTCATGAAAGGAGAGCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCCAATCAGATCCCTAACAAATACATCAACCGTCTGACAGAGATTCAGGGATTCAATGAGTCTCAGAAGGAGGAATATTTTAGGAACAGAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCACACATCAAAAGAGCAAGAAGCCTCCACATCATGTGCCACATACCCGTCTTCTGCTGGATCTCATCCACTGTGCTTCAAAAGCTTCTGAAAGAAGATCTGAGTGCAGAAATCTCTCAAACTCTGACTGAAATGTACATCCACTTCCTGCTGATTCAGATCAACATGAGGAATCAGAAATATGAAGAGAGAGATCCAGAGAAACTCCTCCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAAGTTGCTTTCAATCAGCTGATGAAGGGCAATGTGATGTTCTATGAGGAGGACCTGAGAGAGAGCGGCATAGACGTCACTGACGCCTCAGTGTATTCTGGGATTTGCACTGAGATCTTTAAGGAGGAATCAGTGATTCATCAGAGGAAGGTCTACAGCTTCATTCATCTGAGCATTCAGGAGTTTCTTGCTGCTTTTTATGTGTTTTACCATTATGTAATAAAACATGTTGACACATTGCATTTTATTGATGTAGTGCATTATCTACATAGAATCGCAGTAGATAAAGCCATTAAGAGTGAGAATGGACAGCTGGATCTGTTCCTGCGATTCCTGCTGGGCGTCTCACTGGAGTCCAATCAGAGACTCTTACAGGATCTACTGACACACACAGTGAACAGCTCAGAGAGCATCAGGAGAACCACACAGTACATTAAAGAGAAGATCAAAGATGGACATAGACTCTCAACTGAAAAATCCATCAATCTGTTCCTCTGTCTGCTGGAAGTCAAAGATCAGACTCTGTCCAGAGAGATTCAGGTGTTTGTGAAATCAAAGAAACGCTCAGAGAAGAAACTCTCTCCTGCTCACTGCTCAACAATCGCCTACATGCTTCAGATGTCAGAGGTGGTGCTGGATGAGCTGGACCTCAAGAAATACAACACATCAGATGAGGGTAGAAGAAGACTGATACCAGCTGTGATCAATTGCACAAAAGCCCGTCTTGCTGGCTGTAATCTCAACGAACAGTCATATGAAATTGTGTCATCAGCTCTACAATCCTCAAACTCTGTCCTGAGAGAGCTAGACCTGAGTAACAATGACCTACTGGATTCAGGAGTGAAGTTGCTTTCTGATGGACTGAAGAGTCCAAACTGTCAGCTGAAGATACTGAAGTTGTCAGGCTGTATGGTGACAGAGGAAGGCTGTGGTTATGTGTCTTCAGCTCTGAGTTCAAACCCCTCACACCTGAGAGAGCTGGATCTGAGCTACAATCACCCAGGACAATCAGGAATCAAGCTGCTCAACAACAAACTGCAGATACTCAAATCAGATCATGGAGGGCCCTTCAGGATAAAACCAGGACTACGAAAATGTAGGTTCTTTCTCTGACTCACTCTTGCACATTTAATAGAAACAAATGAGGTTAATAAA

Function

NR:

description
hypothetical protein cypCar_00038747

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04728914_04731946.mRNA True 4075 mRNA 0.38 4 4728872 4733723

Neighbor

gene id symbol gene type direction distance location
CI01000057_04718947_04721031 NA coding downstream 7796 4718918 ~ 4721076 (-)
CI01000057_04657451_04663499 NRAMP-BETA, SLC11A2, NRAMP-ALPHA coding downstream 65373 4657262 ~ 4663499 (-)
CI01000057_04647822_04649004 NPFFL coding downstream 79868 4647773 ~ 4649004 (-)
CI01000057_04635274_04644405 NA coding downstream 84467 4635217 ~ 4644405 (-)
CI01000057_04597494_04597814 NA coding downstream 131058 4597415 ~ 4597814 (-)
CI01000057_04743808_04746558 NA coding upstream 9683 4743406 ~ 4748097 (-)
CI01000057_04787300_04788191 NA coding upstream 52989 4786712 ~ 4788191 (-)
CI01000057_04794580_04834143 COL2A1 coding upstream 59794 4793517 ~ 4834429 (-)
CI01000057_04861618_04865902 ITGA7 coding upstream 127895 4861618 ~ 4865902 (-)
CI01000057_04866089_04878847 ITGA7 coding upstream 132366 4866089 ~ 4878847 (-)
G246662 NA non-coding downstream 3694 4724516 ~ 4725178 (-)
G246658 NA non-coding downstream 14513 4714091 ~ 4714359 (-)
G246600 NA non-coding downstream 73433 4654977 ~ 4655439 (-)
G246632 NA non-coding downstream 130578 4597952 ~ 4598294 (-)
G246587 NA non-coding downstream 169435 4557111 ~ 4559437 (-)
G246669 NA non-coding upstream 16092 4749815 ~ 4750141 (-)
G246676 NA non-coding upstream 47043 4780766 ~ 4781052 (-)
G246691 NA non-coding upstream 67949 4801672 ~ 4804379 (-)
G246703 NA non-coding upstream 129081 4862804 ~ 4863182 (-)
CI01000057_04916382_04926437 ARFGAP1 non-coding upstream 179465 4916287 ~ 4926437 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 831181 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2807451 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 2923719 1801528 ~ 1806454 (-)
G244358 NA other downstream 4157844 570530 ~ 571028 (-)
CI01000057_04927533_04931127 CDK4 other upstream 195021 4927533 ~ 4931420 (-)
G246780 NA other upstream 477387 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1189817 5923540 ~ 5927295 (-)

Expression


Co-expression Network