CI01000057_04866089_04878847 (ITGA7)


Basic Information

Item Value
gene id CI01000057_04866089_04878847
gene name ITGA7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4866089 ~ 4878847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04866089_04878847.mRNA
GATACTGGTTGGGGCCCCTCAGGCCCGAGGTTTGGGAACTTTGCAGAACAGCCGTCCCGGTGCCCTGTATCGCTGCCCGGTTACATCGGAGAAGTGTGAACGAGTGGACATCGATGGAAGTGTGAGTCTGGAGCAAGAGAGCAAAGACAACCAGTGGTTGGGAGTCACAGTTAAAAGTCAGGGGATTGGTGGAAAAGTGGTGACATGTGCTCACCTCTATGAGCACAGACAACATGTCAACCAGACGTTTGAGACACGTGACCCGATCGGACGCTGTTATGTGCTGAGTGAGGATTTGACTGAGAGAGATGATCTGGACGGGGGAGAGTGGAAGTTTTGTGAAGGTCGTTCTCAAGGACACGAGCAGTTTGGATTCTGCCAGCAGGGCCTGTCAGCTAGTTTCACACCTGACAAAAACTACATCCTGTTTGGGGCTCCGGGTACCTACAACTGGAAAGGGCTGTTATTTATGGCCAGTCCTGTTGAGGATGCTCTGGTCTACAAAACTGTGGAACCGTCCAAAAGCTCCGTCAAAGACGTCTCTCAGAACAGCTACCTGGGTTTCTCTGTAGACTCAGCCAAAGGTCTTATAAGTAAGTCTGAGTTGACACTTGTGGCCGGAGCTCCTCGAGCCAGTCACAGAGGAGCCGTGGTTCTGCTGCGGAAGGACAGCGTCTACCGGCTGATGCCGGACCATATTCTGTGGGGCGAGGAACTGGCCTCCTCCTTCGGTTATTCTGTGGCCACTGCTGATCTGAACAGTGATGGTTGGACAGATCTTGTAGTGGGAGCTCCAAATTTCTTCGACCGAAAGGCAGAGATTGGAGGTGCGGTGTATGTGTTTCTGAACCCAGCCAGCCACTGGGAAAAGGCACGACCGATCCGACTCAACGGAACGTATGACTCTATGTTTGGGATGACCGTCAGCAGTGCTGGAGATCTGGACTGGGATGGTTATGAAGAAGTGCCATCACAGTGTTTCGACTTTAATCATCTGTATATTTATCATCATATCAAGGTTCTGGATGGGCTTAATGCAGGGGTCAAGCGACTGGGCTACTCCATATCTGGAGGACTAGATGTTGATGGAAATTTTTATCCAGATCTAGCCGTCGGCTCCCTCAGTGATCAGGTTGTGCTTTACAGGTCACGTCCAGTGGTCCACGTGATCCGAGAAATTTCCATCGAGCCTCAGTACATTGACCTCACGCAGCACAGCTGCCGGGGGCAAGATGGTGTTTGTGTGGACGTGAAGGCCTGCTACAAATACACGGCTTATCCAGACTCCTACTCACCACATATCAGTAAGAAATTCAACATCTATAACAACAACATTCGCTCACTCGCTGTACATTTTGAGGCGGACGTAGAGCGCAGGAAGTTGAGTCTTCCTCACAGAGTTCACTTCCTGGACCGCAGTTTATCAGAGCCGGAGTACGTTCATTCTGTGGAAGTGGAGCTACGTGGACAAAAACATCCGGACTGTCAAACAGTGACTTTTGCTGTGAAGGTAGATCTGGAGATGCAGATGAATGTGTGTATTGACAGCGCCCTCTTTCCACCTGGTGTAAAGATGGAAAACATTCGGGACAAGCTGCGGCCCGTCTCTCTGGCGATCACACACACTATACGGAGAAGAAGACATCACCATCACACGGGACACCATAACCAGCTGAGCCCCGTCCTGAGCCTCAGTCCCTCCAACACACTCTACTCTGAGGTTAATTTTGTCAGGGAAGGGTGTGGTGAGGATAAAATATGCCAGAGCAACCTTCAGCTTGTCTATCAGTTTGGCACAAAAGCACCCATTTCAAACGACTTCACTCCTCTACCGCGAGACGGGTCTGATGTGCCAGTGTTCTCTCTGTCGGATCAGAGGTCAATAGTGCTGGAGGTCACAGTGACTAACATGCCGTCTAACCCAGAAACCCCGCAGGAGGATGGAGATGATGCCCACGCCGCCCAGCTGCTGGTGTCTCTGCCAAACACGCTCTCGTACTCTGGACTCATGGGGCAGCAGGTGTTGTGTGAAGTCAATCAGAACGGCTCTCAGGCGCTCTGTGAACTGGGCAATCCATTCAAAAGAGAAGCGACGGTCAAATTCTATCTTATTCTGAGCACTTCTGCGATCACTATAGAAACTACGTCACTGTCTGTTCATCTCGCACTCTCCACGATAAGTGAGCAGCCTTCTTTGGCCCCTGTCACGGCGTTTGCGCGAGTGGTGATTGAACTTCCTCTGGTGCTCAGCGG

Function

symbol description
itga7 Acts upstream of or within cell-matrix adhesion; muscle attachment; and skeletal muscle tissue development. Is expressed in myoseptum; myotome; skeletal muscle cell; and somite. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; congenital muscular dystrophy due to integrin alpha-7 deficiency; and muscular disease. Orthologous to human ITGA7 (integrin subunit alpha 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04866089_04878847.mRNA True 2253 mRNA 0.51 16 4866089 4878847

Neighbor

gene id symbol gene type direction distance location
CI01000057_04861618_04865902 ITGA7 coding downstream 187 4861618 ~ 4865902 (-)
CI01000057_04794580_04834143 COL2A1 coding downstream 31660 4793517 ~ 4834429 (-)
CI01000057_04787300_04788191 NA coding downstream 77898 4786712 ~ 4788191 (-)
CI01000057_04743808_04746558 NA coding downstream 117992 4743406 ~ 4748097 (-)
CI01000057_04728914_04731946 NA coding downstream 132366 4728872 ~ 4733723 (-)
CI01000057_04891502_04906844 ELMO2 coding upstream 11388 4890235 ~ 4906844 (-)
CI01000057_04916382_04926437 ARFGAP1 coding upstream 37535 4916287 ~ 4926437 (-)
CI01000057_04927533_04931127 CDK4 coding upstream 48686 4927533 ~ 4931420 (-)
CI01000057_05163258_05169859 NA coding upstream 283793 5162640 ~ 5170119 (-)
CI01000057_05442832_05459768 VGLL4 coding upstream 563937 5442784 ~ 5459768 (-)
G246703 NA non-coding downstream 2907 4862804 ~ 4863182 (-)
G246691 NA non-coding downstream 61710 4801672 ~ 4804379 (-)
G246676 NA non-coding downstream 85037 4780766 ~ 4781052 (-)
G246669 NA non-coding downstream 115948 4749815 ~ 4750141 (-)
G246662 NA non-coding downstream 140911 4724516 ~ 4725178 (-)
G246682 NA non-coding upstream 58104 4936951 ~ 4937172 (-)
G246750 NA non-coding upstream 66551 4945398 ~ 4945752 (-)
G246751 NA non-coding upstream 67540 4946387 ~ 4946622 (-)
G246753 NA non-coding upstream 70706 4949553 ~ 4952336 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 968398 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2944668 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3060936 1801528 ~ 1806454 (-)
G244358 NA other downstream 4295061 570530 ~ 571028 (-)
G246780 NA other upstream 332263 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1044693 5923540 ~ 5927295 (-)

Expression


Co-expression Network