CI01000057_05442832_05459768 (VGLL4)


Basic Information

Item Value
gene id CI01000057_05442832_05459768
gene name VGLL4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5442784 ~ 5459768 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_05442832_05459768.mRNA
ATGTGTCGGGGCGGTGTGGACGTTTACTGCAGCGCAGCCTTTTCTCTATTAGCAGCTCCGGCCCCTGCCAAAAACAATGATGTCAGCTCCGTTGCCATGGAGCACGGACAGACGAGCCGAAACATGTCAGTCGGGAAAATAGGCCGCTTGTTTTGGGAAGTACCTCATACCAGTCAAGTGTTCTTAAAGAAAGAGAGAACTATATCAAAGGAAAGACTGATGAGCGAAGCTGCTCTGAGAGGAGAGCCCAGAATGCAGTCCATGTCCCTGTCCTCTGCAGTCAGCAATCACAGGACGGGCCCTCCTCCCATCAGCCCCAGCAAGAGGAAACACAGCGGGGACCAAGCAGACGACGACATCGACTGTAACAGCGAGCATGTGGCCAAGATGAGCCGGCTGTTTGTCGCACAGTTGGGAAAAGAAAAACAGGAAAGGAGAGGCAAGCCTGCCAATGGGGACTACCGCAAGGACCCCCGGGATCGCAGCCGCAGTCCCATAGAGCGCCTCGGCGCCCCCGCCATGAGTCTCGTTGGTGGTCACCTCTACGCCCACATGCCCAGCCTGGCCATGGACCAGCCTCTCGCACTGACCAAAAACATGGACGCCTCCCGCACTGTTGCCATCTCGCCTACTGTCAGCCCTGTTGAGCGCCAGCAGAATCGGCCATCTGTGATCACATGTGCCCCAGCGAACAACCGTAACTGTAACCTCACCCACTGCACCGTGTCTCACAACGGCTGCTCACCCAGCTTGACTTCAAACTATCGGAGACCCTCCAACTTGGAAAGTGCCATTTATCAGCTGTGTGAAAGTGTTTTAGCAAAATACATCTGTACTAAACAGCCTTTCCCTGTGCCTTTAGCGAACACCGCCTGTGACCCCGTCATCGAGGAGCATTTCCGTCGCAGCCTGGGCAAGAACTACAAGGAGCCCGAGCCCGTAACAAACTCGGTGTCCATCACCGGCTCGGTGGACGACCACTTCGCCAAGGCGCTGGGTGAGACGTGGCTGCAGATCAAGGCCAAGGGCGGCTCCTCCGGAAGCCCAGACTCCTCTCCGAACGGCCACATGTATACTTTTAGCTTGGCTGTTGCGTTATGGGATGCCCATACCTTTATAAACAGCATCGTCGAGCAGGAAGCCTTTCGGTTTTTGAGATCAAAATCAGCCAGGCGCTTATCTAACCATCTGCCTCAGATACCAAAGAAACCGCTGATGCAAACCTTTTACCCAGAAGCCATTCTTCCATTGCACCCAATCTGTCTTTCACACACTCTCTCCCGGTCGTACCCTGAATCTGCATGTGTATACTTGAAACAGAAGGCCTGGACTGATTTTGCACTATGGATGGATCGAGGTGGTGTCAGTTTAGCGTCGGATGCACGCGATCGGATGTTCAGAAGACGTATAGGAGGCTGTGGAAACGGGCCTGGTTTTCCAACGGTCCGCCTGTACCGAAACAAAACACATTCCTCCGATAGGGAACGTCGTGCAGGTCTTGTACTTTCTCCCGTGTTCAGTATAGCTACTAACTCGAGACAAGAGGTTGCAGATGCAGGAGACGCTTGCGCTCGTCCTTACATTCCATCGGCCCCATTGGATACGGCTAAATTCTCATATGAAGAAGAGCTCATCGTTGGCGACGTGCGAGCGCCCTTTTCTAAAGTCCTTCTTCACGGTGATTTCATCGCTCCTTTTGCATGCATTTCCCACAACATTGTCGAATCCTACGCGAGACCTTCAGGGTTTACGGAGGAGAACGACGACAAGAAACCAACGTTTAAAACACTTCGCTGCACCTCGAGTGTACTTCTTAATGATTTGTAAATCTGTATTATACCCTCATTTCATGGCCTTGTTTCTCCTTGGAATAAA

Function

symbol description
vgll4 Predicted to enable transcription coactivator binding activity. Involved in negative regulation of Wnt signaling pathway; negative regulation of cell growth; and negative regulation of hippo signaling. Predicted to be located in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_05442832_05459768.mRNA True 1875 mRNA 0.53 10 5442784 5459768

Neighbor

gene id symbol gene type direction distance location
CI01000057_05163258_05169859 NA coding downstream 272665 5162640 ~ 5170119 (-)
CI01000057_04927533_04931127 CDK4 coding downstream 511657 4927533 ~ 4931420 (-)
CI01000057_04916382_04926437 ARFGAP1 coding downstream 516347 4916287 ~ 4926437 (-)
CI01000057_04891502_04906844 ELMO2 coding downstream 535940 4890235 ~ 4906844 (-)
CI01000057_04866089_04878847 ITGA7 coding downstream 563937 4866089 ~ 4878847 (-)
CI01000057_05464070_05466835 NA coding upstream 4272 5464040 ~ 5469344 (-)
CI01000057_05486207_05495209 TAMM41 coding upstream 26272 5486040 ~ 5495657 (-)
CI01000057_05553430_05562372 NA coding upstream 91790 5551558 ~ 5562448 (-)
CI01000057_05633248_05635383 MKRN2OS.2 coding upstream 173447 5633215 ~ 5635898 (-)
CI01000057_05827116_05827514 NA coding upstream 367325 5827093 ~ 5827837 (-)
G246857 NA non-coding downstream 144696 5297832 ~ 5298088 (-)
G246780 NA non-coding downstream 159167 5086312 ~ 5283617 (-)
G246847 NA non-coding downstream 171431 5261892 ~ 5271353 (-)
G246793 NA non-coding downstream 349521 5063388 ~ 5093263 (-)
G246782 NA non-coding downstream 359382 5081269 ~ 5083402 (-)
G246946 NA non-coding upstream 104754 5564522 ~ 5567290 (-)
G246950 NA non-coding upstream 108570 5568338 ~ 5888474 (-)
G246981 NA non-coding upstream 260023 5719791 ~ 5720606 (-)
G247041 NA non-coding upstream 403017 5862785 ~ 5886376 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 1545093 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3521363 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3637631 1801528 ~ 1806454 (-)
CI01000057_05925181_05926068 NA other upstream 463772 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003121 vgll4b coding NC_007122.7 CM002895.2 807153 ~ 815216 (+)
bowfin (Amia calva) AMCG00009601 NA coding CM030126.1 CM030126.1 42510836 ~ 42517883 (-)