G246847


Basic Information

Item Value
gene id G246847
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5261892 ~ 5271353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU280154
TTATAATCTATAATACTTTATTTTTTTTAAATCAGATAACATATGGCAATCATGCTTTTATATAACACCATCTAAAGACATTTATTATATATATTTATATATATATATATTTTCTTTACATAGAATATTTTACATTAGGCCCAAACAGTTAGAAATATACAAAACAATATTGTGTTCGACTAGACATATTATCTATTCTCTTATAATCTTCCATCATTGTTATTCATTTGTTATTACTATTCTTTTTTACATTTCATAAAGATATGTGCTTTAGTTTCTGAGATCGATGCATTATTGCAGTAAACAGCAAATAATATAAGGTTCTTCAACAAGACAAAAACCTCAAAACGGACATTCACAGGTACTTTTACACGGTACAGTTTTACAACATTGTTTCAGAGAGAAATCTGATGAATGGTAAATTTATACAATTTCACGAAAAAACTCTTATTGATTGCACATTTTCATCAGACGTCTTGCAGAGAATAAATCGACTAATTAATCCAGATCTCTGTCACATGTAGCTGCCGTAGAAGCAAACTAACAGTGTTCATTTTCGATACCTTTGTGGCTTGTGAACTTAAAGCTTTGTGCTTTTCACCAGTGGCATTTCAAAATAAAACAGTGGAAAGAACACACACACACACACACACACACGCACACACACACACGTATATTCATTTATATTATTCCATGTAAATGATTTATTGCCCAACTAGTCTGCAGATTTAAAAAGAACATAATTTTCCTTTACATTTTCTCATTCGAACGACGGCTCTGTTCGTTTTTGACACATAGTGCTGGTTTGTCAACGATGTCTGAAAAAAATGACCCTAGAAACCATGGCAACAGACTATAGCTTCTGCTCAGGACTGATTATTTGCTGAAGGCTGCTCACAGCTATAATCGTTTTCGATCCAGGAGAGCAAATTTTGGTCACTTTCGCCATTTTTCCTGAGGAGTGGCACGCAAATGTGGTGAGCAGGATTAACAGTGGTTTCGCGGGGTACGTCTGCCCCAAAAAACGATTTTTCGGACCCTGTGCAGTGATACGGTGCGACGTAGAACAGTTTTTCAGATCTGTCAGTAGCATAAACATGAATTTGGTCCTTCTTACTCTTACATAGAAAACATGTACTAAAATGATTCTAAAAAACACATATAAAGTTATTTTTTGTCTTAGAAAAAAAAGGAAAAAAATAGTAACAGTCTTTTTTTGATGTCAATTTGCCCCTGCGGCTGGTAATGCATGACTGCCCGGGGCGTTTGTAAACCCAAATCCATACTGGTCTTGTGCTTTTCAGGATTTCGCCCGAGGGCTAAACGGGAGAAAAGGGCTGTTTGAAACTGTACAGTCTTGAAAAGTGTAGTCTGGCTACGTAACCTTGACATCAAGGTTCAGTCTCGGCCCGTTGCACACTCCCATATTCTCACTCTCTGCTTTTATATAGCTATATAGATATAGTTTATATATATATATTTTCAGATACAATCAGATACAATTCGATTCTAACCTACAACTGTATTTTTATATTTTAATACATTAATTACATGTAATATATCAAATTAACACTGTGGTGTTGGAATTACACTGGGACGCCAAATCTTGAATTATCGTTTAAATTATGTCCTGTGCTTACGCTGTGACCCTTTGTTTTTTAGAAAGACTAACATCTTGCATATGAAATACAGATTAACCCTAGAACATTGCTGAATAGATTGTTTTTTGACCATACGTATATATGTACCAAAAGAAGTCAAACTGTAATCAGGTTGGTTTTCCCTCGGAGGTAGGTGAATATACTTTAGACATGGAAGTCCTTGGTTGTGATCGACTCTTTAATTCTTTCTCTGAACGTTGACCTTTGATAGTACGGGTGAAGAAGGAGGACGGCGGTTAGATGTAGGCCTCGTCGTTGGCTGGGGTGGGGTTTTCAGGTTGCTGTTCGGGCCCGTTCTCTTGAGTCCGAACCACCGATGTGGGCTGAATCATTATCCGAAGGCGCTCTTTATATGAGCCCTTCAGGGTGAGGAACATGTAGCCCATGTATCCCGGGATAAGAATCATGGATGACAGGGCCATGCACCAGCCTACACCTTGCCCCCACTTTGGGAACACGTAATTGTTCATTGTAAGCGGGACCATCTGAACGGCGCTGAAGATGAATACACCCGCCACGATCAAAGGGGTGAATACGACCCAGCACAGCTTCCACCAAATGCAGGGCTGGTAGCCGATCATCTCCTCAATGTTGCCGTAGAATTTATTGACACCATAGAACCAAGATATGGAGATGCATTCAAAGAACACCAGGAACAGCAAACACATTCCACTGGCGGAATAGTAGTCAAAGAGTTTGAACACATAGAGGCCACCCTGTGTGATGTTCGACAGGCCGATCAGATACGACACCAGGCAGACACCAGCGATGAAGATCTCTCGTCTTCCTCGTAGCAAGCGGGGAAACTCGTCGACGAGAGCAGTGATGAAGCCCTCCACCGTACAGAACTGACTGTCAATGCCAAGCATGAGCAACATGGAGAAAAACAGAATTGCCCAGAGCGGTGAGATGGGTAACTGTGTGACTGCCTCTGGATAGGCCAAGAACGCCAGCCCCGGCCCCGATGCAGCCACATCTGCTATGGACCGCTTTGTGATGTGAGCCATGAAACCTACGATAGAGAAAATGACGAATCCAGCGAACATACTGGTGAAGGAATTGATGCAGCAGACGATGATAGAATCTTTGTAAACATTGTTGTTGAAAGGGTTGTAGCTCCCGAGGGCGATCAGAGAGCCCAGGCCCAGACCGTAAGAGAAGAAGATCTGAGTGGCTGCATCCAGCCACACCTCTGATTCTTTCAGCTTGCTGAACTCAGGCGTGATATAGAACAAAATGCCCTCTTTCGCTCCAGGCAGCGTCACTCCACGGATGAACAGGATAAATAGCATGAAATACGGGTATGTCGCTGAGAAATATACCACCTTTCCAGTCCAGCCTACGCCCTTCCAGATACAAAAATAGACCAGGACCCAGGCGATGGCCAGTGTTATTGCTAGTGGCAGTCTTATCTCTCCCGGCTGCTCCAGACCATCAGTCAGCTGATGCATGTTCCGTTCCCAGAACTCCACGACGGCGCTCGTCAAGTTGGCGGTGTTTGCCTGGCTGTAGTTTGAGAAACATCTGTCTGTGTTCCAAGGGTTTTCACAAGTTTTCCAGGGGAGCTGTGGTGAATGAGTTATACAGATAGTAAATTGCCCAAGCAATTATGACTATGTAGTAAATGTTAAGCCAGAAGGACAGGACTGCTGCTGCCAGGCCAACACCTTTGAACATAGGGGCCAGTTTCCACACTCCAAGACCACCGATGGACGTGTACTGACCGAGGGACGTTTCCAGAAGAAACAACGGGACCCCAGCAAATATGAGGGTCAAAAAGTAGGGAATCAAGAACGCCCCTCCTCCGTTTTTTCCGCATAGATAAGGAAATCTCCAGACATTGCCAAGTCCAATGGCATAGCCAACACAAGACAGAAGAAAGTCAAATTTTCCCTGCCATGTTTCTCTGTCAGGAATGTCCTTTTTCTTCTGAACTTTAACCACCAGAGTTTTTGGTTTGTCATTGGCGGTGGGCGCTTCGTTCACCTCTGTTAAAACGTGTCCATCGGAGGCTTTCGTGCCGTTCGTGGCCATGTCTCTGGGTTTGGTCCTGGCGGTCGGACGGAAAAGTTCAGCACCGGTCCACGTAGACAGCAGCTTCGCGGTTCGATTAACCAACGATTAGATTCAAAAAACGCCAATGAAGCTTGACACTGGAACAGTTTTCCTGCCAGTTTGGTTGCGGCGGTGCGTATCCGTTGGTTCCTCTCCAATACGAACTCTTGGAATTTTACTTGTCCAAAACAGTGCGAAATGTTTCCATAAAGTCAAGTGAGGCAAATAGCTATCCTGAGGGGAAAGGTGAACGAGGGTCTGGTTGTCTGGTGCTGTCCAATTCTGTGGTGCTGAAGGACAGGGGGAAAGAGCCAGAGACAGGAGCAGCTCCGTCTACCATGAGCGTCCAGAGATGTTACATGAAGCACAGACCGTCACTCTCAATGTCAGCTCAAAGTCGACCCTCCCCGAACACAACATCTCCACCACTGAAATCCCAGACACTGGCCACCTTC
>TU280157
TTATATTATATTATATTATCAGGGTGATGCACAAAATGTGGGACAGAGCTGAACATTACATTTTTGCTTATTACAATTAGTTAATAATTAAAAACACAATTTAATGCAATGAACTGAACAGTTCAGCAGATTATATCAACAAGATTTTAGATGCAGTCGTGACGGTTGAAGCAGGCCATAATCATGATTTTGGGGGTTGGGGTGGATGGTATGACATTTGATGTGTTCAAAAACAGTTTCTAGTTACTGTGCTAGGTTCATTTAAAATAGTTCAGTATTTGTGACTTTAATGCAAAAAAGTCATGTACAGTATTCATGGCAAGTGCTATGGACTCATTTTTATGAGCTACCATGAAATGCTTATAACTGCTTATTGACTAATAATGGACACCGGATGGCAAAACACTGTGTAACTTATAGTAGTAGGTCTTTATCCAGTGATCAAACTGAAGTCCATCATAATTACCCGATGCAGCCACATCTGCTATGGACCGCTTTGTGATGTGAGCCATGAAACCTACGATAGAGAAAATGACGAATCCAGCGAACATACTGGTGAAGGAATTGATGCAGCAGACGATGATAGAATCTTTGTAAACATTGTTGTTGAAAGGGTTGTAGCTCCCGAGGGCGATCAGAGAGCCCAGGCCCAGACCGTAAGAGAAGAAGATCTGAGTGGCTGCATCCAGCCACACCTCTGATTCTTTCAGCTTGCTGAACTCAGGCGTGATATAGAACAAAATGCCCTCTTTCGCTCCAGGCAGCGTCACTCCACGGATGAACAGGATAAATAGCATGAAATACGGGTATGTCGCTGAGAAATATACCACCTTTCCAGTCCAGCCTACGCCCTTCCAGATACAAAAATAGACCAGGACCCAGGCGATGGCCAGTGTTATTGCTAGTGGCAGTCTTATCTCTCCCGGCTGCTCCAGACCATCAGTCAGCTGATGCATGTTCCGTTCCCAGAACTCCACGACGGCGCTCGTCAAGTTGGCGGTGTTTGCCTGGCTGTAGTTTGAGAAACATCTGTCTGTGTTCCAAGGGTTTTCACAAGTTTTCCAGGGGAGCTGTGGTGAATGAGTTATACAGATAGTAAATTGCCCAAGCAATTATGACTATGTAGTAAATGTTAAGCCAGAAGGACAGGACTGCTGCTGCCAGGCCAACACCTTTGAACATAGGGGCCAGTTTCCACACTCCAAGACCACCGATGGACGTGTACTGACCGAGGGACGTTTCCAGAAGAAACAACGGGACCCCAGCAAATATGAGGGTCAAAAAGTAGGGAATCAAGAACGCCCCTCCTCCGTTTTTTCCGCATAGATAAGGAAATCTCCAGACATTGCCAAGTCCAATGGCATAGCCAACACAAGACAGAAGAAAGTCAAATTTTCCCTGCCATGTTTCTCTGTCAGGAATGTCCTTTTTCTTCTGAACTTTAACCACCAGAGTTTTTGGTTTGTCATTGGCGGTGGGCGCTTCGTTCACCTCTGTTAAAACGTGTCCATCGGAGGCTTTCGTGCCGTTCGTGGCCATGTCTCTGGGTTTGGTCCTGGCGGTCGGACGGAAAAGTTCAGCACCGGTCCACGTAGACAGCAGCTTCGCGGTTCGATTAACCAACGATTAGATTCAAAAAACGCCAATGAAGCTTGACACTGGAACAGTTTTCCTGCCAGTTTGGTTGCGGCGGTGCGTATCCGTTGGTTCCTCTCCAATACGAACTCTTGGAATTTTACTTGTCCAAAACAGTGCGAAATGTTTCCATAAAGTCAAGTGAGGCAAATAGCTATCCTGAGGGGAAAGGTGAACGAGGGTCTGGTTGTCTGGTGCTGTCCAATTCTGTGGTGCTGAAGGACAGGGGGAAAGAGCCAGAGACAGGAGCAGCTCCGTCTACCATGAGCGTCCAGAGATGTTACATGAAGCACAGACCGTCACTCTCAATGTCAGCTCAAAGTCGACCCTCCCCGAACACAACATCTCCACCACTGAAATCCCAGACACTGGCCACCTTC
>TU280156
TTATATTATATTATATTATCAGGGTGATGCACAAAATGTGGGACAGAGCTGAACATTACATTTTTGCTTATTACAATTAGTTAATAATTAAAAACACAATTTAATGCAATGAACTGAACAGTTCAGCAGATTATATCAACAAGATTTTAGATGCAGTCGTGACGGTTGAAGCAGGCCATAATCATGATTTTGGGGGTTGGGGTGGATGGTATGACATTTGATGTGTTCAAAAACAGTTTCTAGTTACTGTGCTAGGTTCATTTAAAATAGTTCAGTATTTGTGACTTTAATGCAAAAAAGTCATGTACAGTATTCATGGCAAGTGCTATGGACTCATTTTTATGAGCTACCATGAAATGCTTATAACTGCTTATTGACTAATAATGGACACCGGATGGCAAAACACTGTGTAACTTATAGTAGTAGGTCTTTATCCAGTGATCAAACTGAAGTCCATCATAATTACCCGATGCAGCCACATCTGCTATGGACCGCTTTGTGATGTGAGCCATGAAACCTACGATAGAGAAAATGACGAATCCAGCGAACATACTGGTGAAGGAATTGATGCAGCAGACGATGATAGAATCTTTGTAAACATTGTTGTTGAAAGGGTTGTAGCTCCCGAGGGCGATCAGAGAGCCCAGGCCCAGACCGTAAGAGAAGAAGATCTGAGTGGCTGCATCCAGCCACACCTCTGATTCTTTCAGCTTGCTGAACTCAGGCGTGATATAGAACAAAATGCCCTCTTTCGCTCCAGGCAGCGTCACTCCACGGATGAACAGGATAAATAGCATGAAATACGGGTATGTCGCTGAGAAATATACCACCTTTCCAGTCCAGCCTACGCCCTTCCAGATACAAAAATAGACCAGGACCCAGGCGATGGCCAGTGTTATTGCTAGTGGCAGTCTTATCTCTCCCGGCTGCTCCAGACCATCAGTCAGCTGATGCATGTTCCGTTCCCAGAACTCCACGACGGCGCTCGTCAAGTTGGCGGTGTTTGCCTGGCTGTAGTTTGAGAAACATCTGTCTGTGTTCCAAGGGTTTTCACAAGTTTTCCAGGGGAGCTGTGGTGAATGAGTTATACAGATAGTAAATTGCCCAAGCAATTATGACTATGTAGTAAATGTTAAGCCAGAAGGACAGGACTGCTGCTGCCAGGCCAACACCTTTGAACATAGGGGCCAGTTTCCACACTCCAAGACCACCGATGGACGTGTACTGACCGAGGGACGTTTCCAGAAGAAACAACGGGACCCCAGCAAATATGAGGGTCAAAAAGTAGGGAATCAAGAACGCCCCTCCTCCGTTTTTTCCGCATAGATAAGGAAATCTCCAGACATTGCCAAGTCCAATGGCATAGCCAACACAAGACAGAAGAAAGTCAAATTTTCCCTGCCATGTTTCTCTGTCAGGAATGTCCTTTTTCTTCTGAACTTTAACCACCAGAGTTTTTGGTTTGTCATTGGCGGTGGGCGCTTCGTTCACCTCTGTTAAAACGTGTCCATCGGAGGCTTTCGTGCCGTTCGTGGCCATGTCTCTGGGTTTGGTCCTGGCGGTCGGACGGAAAAGTTCAGCACCGGTCCACGTAGACAGCAGCTTCGCGGTTCGATTAACCAACGATTAGATTCAAAAAACGCCAATGAAGCTTGACACTGACCTGGAAACGATTGAGAGAAATTGTCGTTTAGATATACACATTATTGTGTTCGTCACATGCATTCGAGGTCAATTTATTAATACAATAATATTAAAATAAAAATGATTGAATAAAATAATATGCACTTACCCAACTGAATAAAATACAAATTGGTGCACAGTTTAGCGCGCACAGCTCAGACAAAACGCGTCTATACACATTTCTTTATTTTTAAATAACTAAAAGAATCGATTTTGTACATTTCTTTTATCTAAAACTTTAACGTGTCCAAAACAGTTTCTCGAG
>TU280158
CGCATTTTTGTGGAACAACAGTGGCTCTTTTACACAGCCGAGGACAAAAGGAAAGTGTCTGCATGTTGCTAGAATACGAAATTCCAAAAAATCTGCCCTTACTCCCAGAACTCCACGACGGCGCTCGTCAAGTTGGCGGTGTTTGCCTGGCTGTAGTTTGAGAAACATCTGTCTGTGTTCCAAGGGTTTTCACAAGTTTTCCAGGGGAGCTGTGGTGAATGAGTTATACAGATAGTAAATTGCCCAAGCAATTATGACTATGTAGTAAATGTTAAGCCAGAAGGACAGGACTGCTGCTGCCAGGCCAACACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU280154 False 4171 lncRNA 0.43 15 5261892 5271353
TU280157 False 2015 lncRNA 0.46 9 5261892 5266150
TU280156 False 1948 lncRNA 0.43 8 5262803 5266150
TU280158 True 313 lncRNA 0.46 2 5263961 5264351

Neighbor

gene id symbol gene type direction distance location
CI01000057_05163258_05169859 NA coding downstream 91773 5162640 ~ 5170119 (-)
CI01000057_04927533_04931127 CDK4 coding downstream 330765 4927533 ~ 4931420 (-)
CI01000057_04916382_04926437 ARFGAP1 coding downstream 335455 4916287 ~ 4926437 (-)
CI01000057_04891502_04906844 ELMO2 coding downstream 355048 4890235 ~ 4906844 (-)
CI01000057_04866089_04878847 ITGA7 coding downstream 383045 4866089 ~ 4878847 (-)
CI01000057_05442832_05459768 VGLL4 coding upstream 171431 5442784 ~ 5459768 (-)
CI01000057_05464070_05466835 NA coding upstream 192687 5464040 ~ 5469344 (-)
CI01000057_05486207_05495209 TAMM41 coding upstream 214687 5486040 ~ 5495657 (-)
CI01000057_05553430_05562372 NA coding upstream 280205 5551558 ~ 5562448 (-)
CI01000057_05633248_05635383 MKRN2OS.2 coding upstream 361862 5633215 ~ 5635898 (-)
G246793 NA non-coding downstream 168629 5063388 ~ 5093263 (-)
G246782 NA non-coding downstream 178490 5081269 ~ 5083402 (-)
G246764 NA non-coding downstream 291930 4969033 ~ 4969962 (-)
G246763 NA non-coding downstream 298352 4963341 ~ 4963540 (-)
G246753 NA non-coding downstream 309556 4949553 ~ 4952336 (-)
G246857 NA non-coding upstream 26479 5297832 ~ 5298088 (-)
G246946 NA non-coding upstream 293169 5564522 ~ 5567290 (-)
G246950 NA non-coding upstream 296985 5568338 ~ 5888474 (-)
G246981 NA non-coding upstream 448438 5719791 ~ 5720606 (-)
CI01000057_05827116_05827514 NA non-coding upstream 546566 5827093 ~ 5827837 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 1364201 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 3340471 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3456739 1801528 ~ 1806454 (-)
G244358 NA other downstream 4690864 570530 ~ 571028 (-)
CI01000057_05925181_05926068 NA other upstream 652187 5923540 ~ 5927295 (-)

Expression


Co-expression Network