CI01000057_04891502_04906844 (ELMO2)


Basic Information

Item Value
gene id CI01000057_04891502_04906844
gene name ELMO2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 4890235 ~ 4906844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_04891502_04906844.mRNA
ATGGTCTCTGTCGGGATCGGAGCAGTTCGCCCTGCGTTACGCTGACGGGCCGCAGCTCTACATCACTGAACAGAGCCGTAGTGAAATGAAAAACGGCACCATCCTCCGACTGGCCATCTCTCCTATGCGAGCCGCTCGACAGCTGCTGGAGCGGATCCAGTCTCATGGGATCGACGCCCGTCTGGAGGCGTTGAAAGAGCTCGCTAAACTCTCAGCTGACCCCACATTCGCCACAGAGTTCATCAACATGGAAGGCCTGGCGACACTGGCACGGCTGGTGGAGAGCGGCACACATTTTGGGGAGATGTTGGCCTTCACTCTCACGGCATTTCTGGAGCTCATGGATCACGGCATCGTGTCCTGGGATCTGATATCTATGTCCTTCATCAAACAGGCAAGTTACGTGAACCAGCCCATGGTGGACGTGTCCATTCTGCAGCGCTCACTGGCCATCCTGGAGAGTATGGTGCTCAACAGCCACAGCCTGTACCAGCGCGTGGCGCAGGAGATCACTGTGGCGCAGCTCATCGCACACCTGCAAGTGTCCAATCAGGAGATCCAGACGTACGCCATTGCTCTCATCAACGCCCTGTTCCTCAAAACCCCCGAGGACAGACGCCAGGAGATGGCAAGTACACTGGCACAGAAACACCTCCGTGGCATCATACTAAACCACATCATCCGTGGGAATCGACCCGTCAAAGCTGAAATGGCGCATCAGCTATACGTGCTGCAAGTTTTGACCTTCAACCTTCTGGAGGAGCGCATGATGACCAAAATGGACCCCAATGACCAGACACAGAGAGATATCATATTTGAGCTCCGACGAATCGCGTTTGATGGAGACAGTGATCCAGGCGGAACAGAAAAGAGAAAAGCAATCTACACTAAAGACTACAAGATGCTGGGCTTCACCAATCCTGTGAATCCTGCCATGGATTTCACTCAGACGCCCCCGGGAATGCTGGCACTCGACAACATGCTGTACCTCGCCAAACTGCATCAGGACACGTATATCAGGATTGTTCTAGAAAACAGCAGTCGAGAAGATAAACACGAGTGCCCATTTGGTCGCTGTGCCATTGAGTTGACACGCATGCTGTGTGATATTCTACAGGTTGGAGAACTGCCGAATGAAGGGTGCAACGACTACCATCCGATGTTTTTTACCCATGAGCGCGCTTGGGAAGAGTTCTTCTGCGTTTGCATACAACTGCTCAACAAGACGTGGAAGGAGATGAGGGCCACTGCGGAAGATTTCAACAAGGTGATGACGGTTGTGCGTGAGCAGATCACCAGAGCTCTGGCCATGAAACCGCCGTCACTGGAACAGCTGCGGGTCAAACTGCGCAGTCTGAGCTACTCTGAGATCCTGCGTCTGCGTCAGTCTGAGAGAATGAGCCAGGACGACTTCCAGTCGCCTCCCATAATTGAGCTCCGTGAGCGGATCCAGCCGGAGATTCTGGAGCTGATCAAACAGCAGCGACTCAACCGCCTGTGTGAGGGAAGCTGCTTCCGCAAACTCGGCAATAGACGGAGACAAGAGAAGTTCTGGTTCTGCCGCCTGTCGTTGAATCACAAGGTCCTTCACTATGGGGATCTGGACGAGTCTCCGCAGGGTGAAGTGCCGTTTGAGCTGCTCACTGATAAGATTCCTGTGTCGGACATGAAAGCCGTGCTGACCGGGAAAGACTGTCCGCACATGAAGGAGAAGAGCGCGCTCAAACAGAACAAGGAAGTGTTAGAGTTGGCATTTTCCATCCTCTATGATCCTGATGAAGCTCTCAACTTTGTGGCGCCCAACAAATATGAGTACTGCATCTGGACGGATGGACTCTCGGCTCTGTTGGGGAAGGAGCTGGGCAGCGACCTCACACGAAGTGACCTTGACACACTAATGAGCATGGAAATGAAGCTCCGCCTCCTCGATCTGGAAAACATCACCATCCCCGAGGCTCCGCCCCCTGTGCCGAAAGAGCCCAGCACGTACAACTTCACCTATAACTACGGATGAGACGTTTGTCCATTTAATCAGTGTTTTTCTGTGTCTGTCACTCTTCAGAGGTGAAGTGTGTCACTAAGATACTTTCTTGCCAATTTCATGTACTGTAAGTCCGTCACTGGTAGTTTGACGTGCTGACGTGTGACATCTGTTTGTTTGAGCGGCCCGACACGTAAACTACTGACGCGACCGAGTTCAACATGGACGAAAGGTGCGGAAGCAGCAGAAATGACACACTTCACCTTTAAGCTAGTGTATGTGCCTATACTACACATGAACTACGAGAGTATTTTTTCAGTCCCTTTTCAAATGTTTGTAAGGCAGAAAAACAAGCGGTTCTTCTGTCTTCAAGTATTTGAGTCGAAGAAAAGCCCTGCAGAAACAGTATCTTAGACATCATTCTGTGTTTAAACATTGTAAGGCATCTACGTCCATGTGCTGATGTGATGTTAAAAGCTTATACGAGTAACAAAACTGAACAATTAGTAACTTTGTACCCCACAGATCCGTCCGAAGATAACTAATATTTACTGACGTTTGCTTTTGTCAATAGAAATATATATTTTTGTACTTGATGTGAAAGACACTATATGATACATTGAGGAGTTTGCATGAAAGAACGAAAAGAGCAAGAAGATGGAAACGTATTGTTATGCTGAATTTTGACTCGTAGTTGATGTTTAACAGGACGAACTGAAGCACTGCAGCTGCTCTGTGATATCAGCGTTCAATACAGTCCTTTAAAAACTGTATGTGATAATAGCCATATGACTTCTTTTGGGTTATTTCTTTGTTATAGTATCCAAACATGACTGCTCAATTCGTTTAGTAGGAGAAAAGCCTGCTGATGGTATTTACACATGTTGGTCTTCTCTCTCTGGTGGCGTTCATATTTGAAGGTTGAAAACACAAGAGATGGATCACTAACAGAGGTATAATTATTTGCTTCATTATAAGCCTGTGTGAAGGCTGGTCGTTTTTTGAATGTTTTAGTGGCAGGTATCAGTATTTGGTTTGAAATATTAGTACACATTATAATTATATAGTGCCTTCAGAAAGTATTAATTCCCCTTTATTTCTCATTACAGAGAAGATTCCAGTTGATTTTCCTGTTTTTGATTTCATTGTTATTGAAGGTATACAAAAATATTCCAACATATTAAAATTTGGCGGCGTAACAAAAGGGTGTGAATACTTCCTAAAGGCCACTGTATATGAACTGTATATATTGTGCTGCCTTTATCACAGTAATTGCAATGGATTTGTGTGCAATAATAAA

Function

symbol description
elmo2 Predicted to enable SH3 domain binding activity. Predicted to act upstream of or within several processes, including apoptotic process; cell-cell adhesion; and phagocytosis. Predicted to be located in cytoplasm. Is expressed in brain; mid cerebral vein; and retinal ganglion cell layer. Orthologous to human ELMO2 (engulfment and cell motility 2).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process

KEGG:

id description
K18985 ELMO2, CED12A; engulfment and cell motility protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_04891502_04906844.mRNA True 3281 mRNA 0.47 18 4890235 4906844

Neighbor

gene id symbol gene type direction distance location
CI01000057_04866089_04878847 ITGA7 coding downstream 11388 4866089 ~ 4878847 (-)
CI01000057_04861618_04865902 ITGA7 coding downstream 24333 4861618 ~ 4865902 (-)
CI01000057_04794580_04834143 COL2A1 coding downstream 55806 4793517 ~ 4834429 (-)
CI01000057_04787300_04788191 NA coding downstream 102044 4786712 ~ 4788191 (-)
CI01000057_04743808_04746558 NA coding downstream 142138 4743406 ~ 4748097 (-)
CI01000057_04916382_04926437 ARFGAP1 coding upstream 9538 4916287 ~ 4926437 (-)
CI01000057_04927533_04931127 CDK4 coding upstream 20689 4927533 ~ 4931420 (-)
CI01000057_05163258_05169859 NA coding upstream 255796 5162640 ~ 5170119 (-)
CI01000057_05442832_05459768 VGLL4 coding upstream 535940 5442784 ~ 5459768 (-)
CI01000057_05464070_05466835 NA coding upstream 557196 5464040 ~ 5469344 (-)
G246703 NA non-coding downstream 27053 4862804 ~ 4863182 (-)
G246691 NA non-coding downstream 85856 4801672 ~ 4804379 (-)
G246676 NA non-coding downstream 109183 4780766 ~ 4781052 (-)
G246669 NA non-coding downstream 140094 4749815 ~ 4750141 (-)
G246662 NA non-coding downstream 165057 4724516 ~ 4725178 (-)
G246682 NA non-coding upstream 30107 4936951 ~ 4937172 (-)
G246750 NA non-coding upstream 38554 4945398 ~ 4945752 (-)
G246751 NA non-coding upstream 39543 4946387 ~ 4946622 (-)
G246753 NA non-coding upstream 42709 4949553 ~ 4952336 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other downstream 992544 3887203 ~ 3892054 (-)
CI01000057_01904867_01921400 NA other downstream 2968814 1904533 ~ 1921905 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other downstream 3085082 1801528 ~ 1806454 (-)
G244358 NA other downstream 4319207 570530 ~ 571028 (-)
G246780 NA other upstream 304266 5086312 ~ 5283617 (-)
CI01000057_05925181_05926068 NA other upstream 1016696 5923540 ~ 5927295 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location