XLOC_010078 (tcea3)


Basic Information

Item Value
gene id XLOC_010078
gene name tcea3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34111919 ~ 34135244 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020028
CTTTTCTCAACTGACCGTTCAGGAGCAACTCAAGTTTGGGAACAAAACTTCAAACATTTCGCTGAATTATAAAGATTTATGTGACTTGACGTACTATACACACTTGATTTTCACTTACAGCATATTAATGCGCACACAATGACGCGAGAGGAGGACCTGTTGCGGATTGCCAAAAAACTAGACAAGATGGTGTCTAGAAATAACATGGATGGAGCTCTAGATCTTCTGAGAGAATTGAAAGATTTCAACATGACACTGAAACTTCTTCAGGATACAAGAATCGGCATGTCCGTCAATGGAATAAGAAAACATTGCACAGACGAGGATGTTGTCAACTTGGCAAAGATTCTGATCAAAAACTGGAAGAGGCTTTTAGAATCAGCTCAGAACCCAAAATCTGAGAGGCCAAATGAGGTGAAGAACGGCAGTCATCCAAGCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGAAAGGACTCCACAGATTCCAAAAAGCCTCTTCCTAGGAAGCCGAGCCTGGATGGACGAAGAGACAGTAAGGACTCTACTGACTCCAAGTCAAGCAATCACCTTTTGAAACGACAATCAAGTGAGCCAAAATTGGAGAGGCGAGATTCTACTAACTCAAGGTCTGGCAGCTCACCTCAGGCCAAGAAATCCTGTGAAAGCAAGAGTAAACCAGAGACCCCAAAGACGCCCACAACACCCACAAGCCCCCTGTCCCCATCCTTCAGCTCCAGTGCGGGGCCTTTATCTCCTCGCCTGCAAACCGGAGACTCCATCAGGGACAAATGCATCGAAATGCTGACTGCTGCGCTCCGTACAGATGATGACTACAAAGACTATGGGACAAACTGCGAAGCTATGGGTGCAGAAATCGAGGATTATATATACCAGGAGACAAAAGCCACAGACATGAAATACAAAAACAGAGTCCGCAGCCGCATTAGTAACCTGAAGGATCCCAAAAATCCCAATCTGCGCAAAAATGTCTTGGCAGGGGCAATCGAGTTGAGCCGCATCGCCTCCATGACTGCTGA
>TCONS_00020029
CTGACCGTTCAGGAGCAACTCAAGTTTGGGAACAAAACTTCAAACATTTCGCTGAATTATAAAGATTTATGTGACTTGACGTACTATACACACTTGATTTTCACTTACAGCATATTAATGCGCACACAATGACGCGAGAGGAGGACCTGTTGCGGATTGCCAAAAAACTAGACAAGATGGTGTCTAGAAATAACATGGATGGAGCTCTAGATCTTCTGAGAGAATTGAAAGATTTCAACATGACACTGAAACTTCTTCAGGATACAAGAATCGGCATGTCCGTCAATGGAATAAGAAAACATTGCACAGACGAGGATGTTGTCAACTTGGCAAAGATTCTGATCAAAAACTGGAAGAGGCTTTTAGAATCAGCTCAGAACCCAAAATCTGAGAGGCCAAATGAGGTGAAGAACGGCAGTCATCCAAGCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGGAAAGATGCTCCGGTTGATTTTTTTCCTCCTCCTTCCATCAATTCTCATCCTCCTCTAAGACGCTCATCAGTTGATGTAAAGAGAAAGGACTCCACAGATTCCAAAAAGCCTCTTCCTAGGAAGCCGAGCCTGGATGGACGAAGAGACAGTAAGGACTCTACTGACTCCAAGTCAAGCAATCACCTTTTGAAACGACAATCAAGTGAGCCAAAATTGGAGAGGCGAGATTCTACTAACTCAAGGTCTGGCAGCTCACCTCAGGCCAAGAAATCCTGTGAAAGCAAGAGTAAACCAGAGACCCCAAAGACGCCCACAACACCCACAAGCCCCCTGTCCCCATCCTTCAGCTCCAGTGCGGGGCCTTTATCTCCTCGCCTGCAAACCGGAGACTCCATCAGGGACAAATGCATCGAAATGCTGACTGCTGCGCTCCGTACAGATGATGACTACAAAGACTATGGGACAAACTGCGAAGCTATGGGTGCAGAAATCGAGGATTATATATACCAGGAGACAAAAGCCACAGACATGAAATACAAAAACAGAGTCCGCAGCCGCATTAGTAACCTGAAGGATCCCAAAAATCCCAATCTGCGCAAAAATGTCTTGGCAGGGGCAATCGAGTTGAGCCGCATCGCCTCCATGACTGCTGAGGAGATGGCCAGTGATGAGCTGAAGCAGTTGAGGAATGTTTTGACCCAGGAGGCCATTAGAGAACATCAGATGGCGAAGACTGGAGGAACCACCACTGACCTGCTGCAGTGCGGCAAGTGCAAGAAGAAAAACTGCACCTACAACCAGGTGCAAACCAGAAGTGCTGATGAACCAATGACCACCTTTGTGTTGTGCAATGAATGTGGCAATCGCTGGAAGTTCTGCTAACCTGAAGCAAGAACTCCAACAACAAAGACCATGTAGGattcttctttttttgtaattggaAGAGAAATTAATATCACGCATTCTTCTATCATGGCCCTGAATTATGTGTAAATGATTTTTATACAGAGTTACAGACATTTTGTGTGTATTCTGTAGATTCTTAATTAtggtaaaaaactaaattacCAAGGAAATGTACATTTCTTAAAATTCTACGCTTTTGTACTGTTTTATGAATGCCAGAATTGATTTTTTACTTGATTAATCAGTTTATTATacagaacaaaataataataatggataacATTTACATTTGACAGTTTAAATTCAATTTATGAAGAGAATCCTAATATATTTCAGATGTAGCAGCTGCTTTTTAAATggatctaaaacatttttttaaattatggttatgcaaaaaatactatagaaaaaatgcaaaaacatggTTTAATTCAAACAATAAATGTAATACTGATTTGAA
>TCONS_00020030
AAACTTCAAACATTTCGCTGAATTATAAAGATTTATGTGACTTGACGTACTATACACACTTGATTTTCACTTACAGCATATTAATGCGCACACAATGACGCGAGAGGAGGACCTGTTGCGGATTGCCAAAAAACTAGACAAGATGGTGTCTAGAAATAACATGGATGGAGCTCTAGATCTTCTGAGAGAATTGAAAGATTTCAACATGACACTGAAACTTCTTCAGGATACAAGAATCGGCATGTCCGTCAATGGAATAAGAAAACATTGCACAGACGAGGATGTTGTCAACTTGGCAAAGATTCTGATCAAAAACTGGAAGAGGCTTTTAGAATCAGCTCAGAACCCAAAATCTGAGAGGCCAAATGAGGTGAAGAACGGCAGTCATCCAAGCAAGCCATCGGGATCACCCAGCAGGACTTCTCCTGAGAAAGACTCCAGTCTGCGAAGATCGACGGCGGAAATTAAACCAGACTTAGATTCTAACAAGAAACTTGATGAAAAACAAAGGAGAGAGAAAATCGACGCAGAGTTCAGGAAGGAAAAACGAGAAAGTAACCAGAAAAAAGAGAAACAGTCAATTAACAATAAAAAGGATCAAGAGAGGAAAGATGCACTGAACAGTGATCATCTTCCCTCCCCGTTGACGCTTTCGTCTGTTCCACTTAAGTGTCCTCCGACTGGGGAGGTGAAATGG

Function

symbol description
tcea3 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1860 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3).

Ensembl:

ensembl_id ENSDARG00000004724

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020028 False 1055 mRNA 0.46 10 34111919 34131971
TCONS_00020029 False 1842 mRNA 0.41 14 34111929 34135244
TCONS_00020030 True 697 mRNA 0.42 6 34111963 34118010

Neighbor

gene id symbol gene type direction distance location
XLOC_010077 tent5ba coding upstream 55476 34046733 ~ 34056443 (+)
XLOC_010076 zdhhc18a coding upstream 105584 33992319 ~ 34006335 (+)
XLOC_010075 pigv coding upstream 121195 33987892 ~ 33990724 (+)
XLOC_010074 arid1aa coding upstream 125123 33953644 ~ 33986796 (+)
XLOC_010073 gpn2 coding upstream 168191 33938227 ~ 33943728 (+)
XLOC_010079 oprd1b coding downstream 25591 34160835 ~ 34174260 (+)
XLOC_010080 NA coding downstream 180518 34315762 ~ 34321379 (+)
XLOC_010081 NA coding downstream 184645 34319889 ~ 34323007 (+)
XLOC_010082 NA coding downstream 343753 34478997 ~ 34502203 (+)
XLOC_010083 paqr7b coding downstream 387733 34522977 ~ 34532888 (+)
XLOC_010070 BX530064.2 non-coding upstream 355540 33752102 ~ 33756379 (+)
XLOC_010067 AL954832.1 non-coding upstream 768654 33343151 ~ 33343265 (+)
XLOC_010066 NA non-coding upstream 818139 33250490 ~ 33293780 (+)
XLOC_010065 NA non-coding upstream 897382 33180106 ~ 33214537 (+)
XLOC_010060 NA non-coding upstream 1048760 33058899 ~ 33063159 (+)
XLOC_010085 AL929184.1 non-coding downstream 589324 34724568 ~ 34724682 (+)
XLOC_010086 NA non-coding downstream 778040 34913284 ~ 34916253 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_10641759_10654240 TCEA3 coding CI01000027 null 10641448 ~ 10654240 (+)