CI01000027_10641759_10654240 (TCEA3)


Basic Information

Item Value
gene id CI01000027_10641759_10654240
gene name TCEA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10641448 ~ 10654240 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10641759_10654240.mRNA
GCATAAAATACAATAGACCCAAGTAACAAAATTCATAGTATGTCCCTCCTAAAACCACTCCTAAAAAAATCACAGAACTTTTATCACTCCCTGGTAACATCTATATTTAGGAATTGTAATAAATCCAGAAGTCTTGATTGACAACTGCGACTGTCCCGAAGGCCCCGCCCCCCCGTCTCAACTGACCGTGCAGGAGCAACTTATGCGTGGGAACAAAACTTCGTACATTTCGCTGAATTAATAAGATTTATATGACATAACGTATCATAAACACATCTCATTTTCACTCACTGCATATTAATGCGCACACAATGACGCGAGAGGAGGACCTGTTGCGGATTGCTAAAAAACTAGACAAGATGGTGTCTAGAAATAACATGGACGGAGCTCTAGATCTTCTGAGAGAATTGAAAAATTTCAACATGACACTGAAGCTTCTTCAGGATACAAGAATTGGCATGTCTGTCAACGGAATAAGAAAACATTGCACAGATGAGGATGTTGTCAACTTGGCAAAGATTCTTATCAAAAACTGGAAGAAGCTTTTAGAATCAGCTCAAAACCAAAAGTCTGAGAAGACAAATGAGAATGGCAGTCATCCAAGCAAGCCATCAGGGTCACCCAACAGGACTTCTCCTGAGAGAGACTCCAGTCCACGAAGGTTGACAACGGAAATTAAACCAGACTTAGACTTCAACAAGAAACCCGATGAAAAACACAGAAGAGAGAAACGAGATGCAGAGCTCAGGAACAAAAAACAAGAAAGTGACCAGAAAAAAGAGAAACAATCTATTAACAATAAAAAGGAGCTAGAGAGGAAAGACGCATTGAACAGTGATCATCTTCCCTCCCAAAAGACGCATTCGTCTCCGCCCCCTAAGTGTCCTCTTCCATCTGGGGAAGTGAAGAGGGAGAGGAAAGATGCTCCCGTTGATTTTTTCCCTCCTGCTTCGATCATTTATCACCATCCTCTAAGACGCTCATCAGTAGATGTAAAGAAAGAGAGGGCAAAGAAAGAAATTGATCCGAATGCCCCTCTTCCTCCTTTACCTTTTCATCTACATCCTCCTCAGAAACGAGAGATGAAGAAAGAAAGAAAAGAAACAGCGGATCCCAGTGCTCCTCTCCCTCCTGTTCCTCTTCATCTTCAACCTCCTACACCTACAAAACGTCCCTCATTAGACACAAATAAAGACAAAGAGAAAGAAAGGAGAGATTCTACTAGCTCAAGCAAGAGTAAACCAGAGACCCCAAAGACGCCTACAACACCCACAAGCCCCCTCTCTCCGTCGCTTAGCTCCAGTGTGGGTCCTTTATCTCCTCGTCTGCAAACCGGGGATTCCATCAGGGACAAATGCATTGAAATGCTGACTGCCGCCCTACGTACAGATGATGACTTTAAAGACTATGGGGCAAACTGTGAGGGCATGGCAGCGGAAATAGAGGATCATATCCTTTGTGGACATTATTGGTTGACAGTTACTTGCTTTGTAAAAATGAGTGAGATAAAAGCCACAGACATGAAATACAAGAACAGAGTCCGCAGCCGCATAAGTAACCTGAAGGATCCTAAAAATCCCAATCTGCGTAAAAATGTCTTAGCTGGAGCCATCGAGTTGAGCCGCATCGCCACCATGACTGCTGAGGAAATGGCTAGTGATGAACTGAAACAGTTGAGGAACGTGTTGACCCAGGAGGCCATTCGAGAACATCAGATGGCAAAGACTGGAGGAACCACAACTGACCTGCTGCAGTGTGGCAAGTGCAGGAAGAAAAACTGCACCTACAACCAGGTGCAAACCCGGAGTGCTGATGAACCAATGACCACATTTGTGTTGTGCAATGAATGTGGTAATCGCTGGAAGGCTTTAAAAGGCCTAGGACCTTTCAGGCACAGCCATGGTTGTCCAAAGCTCATCAAATATGCGTGGTTTCTGTTCAGTCAG

Function

symbol description
tcea3 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in adaxial cell; musculature system; neuromast; and somite. Orthologous to human TCEA3 (transcription elongation factor A3).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10641759_10654240.mRNA True 1946 mRNA 0.44 16 10641448 10654240

Neighbor

gene id symbol gene type direction distance location
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding upstream 23926 10609852 ~ 10617522 (+)
CI01000027_10580514_10590458 ZDHHC18A coding upstream 50545 10580191 ~ 10590903 (+)
CI01000027_10574326_10578596 NA coding upstream 61621 10574326 ~ 10579827 (+)
CI01000027_10548922_10551337 GPN2 coding upstream 89796 10548922 ~ 10551652 (+)
CI01000027_10545286_10547348 NA coding upstream 93554 10545286 ~ 10547894 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 coding downstream 7170 10661410 ~ 10669742 (+)
G144298 NA non-coding upstream 989 10640224 ~ 10640459 (+)
G144296 NA non-coding upstream 4516 10621208 ~ 10636932 (+)
G144305 NA non-coding upstream 43186 10598054 ~ 10598262 (+)
G144300 NA non-coding upstream 86169 10554964 ~ 10555279 (+)
G144285 NA non-coding upstream 116088 10525072 ~ 10525360 (+)
G143033 NA other upstream 911897 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2380622 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2609407 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2689506 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3169734 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010078 tcea3 coding NC_007127.7 CM002900.2 34111919 ~ 34135244 (+)