CI01000027_10574326_10578596


Basic Information

Item Value
gene id CI01000027_10574326_10578596
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10574326 ~ 10579827 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10574326_10578596.mRNA
ATGCCCCCAATGCCAAGTGGCAGGAGCAGTGTGAACTTGCAAGATCCATTTGCTGATAGCGACTTCTCACGGAGAAGCACTATGACCCCCAACTCTGGCTACCAGTCAGGCATGAGCACCCCAGAGATGCCTGTTCGCATGGGACCCTATGAACCCAATAAAGACCACTTCAGTGGTATGCGTAAAGTTGGAGAACAGTTCATGTCTGGTGGGCAGGGTCCCAACAGCAGTCTTAGTGATCAGTGCAACAGGGGACCACAAGGCCCTATGGGAAACATGCCTATGGGCCAGCGACACCAGTATCCATATGGTCCCGGTTATGACAGAAGACCAGAGTCAGGGATGGGCACAGATGGCAGCATGGGGCCTGGAGTGCCACAGCCAAATATAATACCTTCCAGTGCTGAAGCTGGAATGTACTCACCAAATCGTTACCCTCCACAGCAACAGCGACATGATTCCTATAGTAATCAGTATCCTGGGCAGGGTGCGCCTCCTGGTGGCTCCTATCCGAATCAGCAGCCTGGAATGTACCCGCAACAACAATTGAACTACAAAAGGCCAGGTGATGGCAGCTACCCACCAGCTAAACGGCATCATGATGGTGAGATGTTCAGTGGGCCATACAACGCTCAGCAGCCACAGCCACCAACGCAGGCTCCCCCTAGTGGTCCCTCAAGTGGTCAGCAGGAAATGTTTAACCAGTATAACAGTTCTTACCCTGGTTCTGAGCGCCGCCCAGCTGGTCCTCAGAATCAGTTCACTTTCCCCTTTGGAAGAGATCGGATGCAAGCAGGGACGGGCCCAAACTCCCAGGGTTCCATTCCACCTCAAATGATGGGCAGTCCAATGCAGTCTGGTCCTGACGGTCCTCAAGGTGGCATGTGGCAGGGCCGAGGTGATATGGGCTACCCCAGTTACCCTAACCGTCAAGGACCTCCTGCTGGTCCTGGCCAGGGACCTGGCTACCATGCAATGAACCGATCTGAAGACATGATGTCATCTGAACCACGCATGAATCATGATGGGCAGTGGCCTGGGCCACGACAACCCCCATATGGCCCTGGTGGTGCAGGTCCACCAATGAGCAGACCCTTGCAGTCCAACTACCAGTCTCCTCAAACCATGCAAAACCACATTCCACAGGTTTCAAGCCCCACGCCCATGCCTCGCCCCATGGAAAGTAGGACTTCCCCCAGCAAATCACCCTTCATGCCCAGCAATATCAAAATGCAGAAGGTGGGACTTCCAGTCCCTGCATCTCACATTGTACCTCCCTCAGTACAGCCTCCAATGATGAGAAGAGACCTATCCTTCCCTCCAGGTTCCATAGAGGCTACGCCGCCAGTTCTCAAATCACGCAGGCGTCTTACCATGAAAGAAATTGGCACTCCAGAAGCATGGAGAGTCATGATGTCCCTTAAATCAGGACTGTTGGCAGAGAGCACATGGGCTTTAGACACCATCAACATCTTGTTATATGATGACAACAGTATTTCAAATTTCAACCTTATACAGCTCCCTGGTTTCCTGGAACTAATTGTTGAGTATTTCCGCCGTTGCCTCATTGAGATCTTTGGGATTCTGAGGGAATATGAAGTTGGTGATCCAGGACAAAGAGCTCTGTTGGATCCCAGCATGCTCAAAAAAGATGAAAACACTGTGGAAGACGAGGTATTGATGGAGGGCATGGAGGAAGATGGAGAAACAGAGGAGGAAGATGAAGGAGAGGAAATGCACAGGTCAAAACATCAAGAACAACATTCAGCACCGCTCCAGATAAAACAGGAAGAAAAACCAAGGACGCTTGAAGACTCTGTGAAGAAAGAAGATTGCCAAGGGATTGAAGGAGAGTCCTCTGCAGAACCCAAGACTTCAGAGCCACCATGTCTCGAGTTGGCTGTGACTCAAGAGAAGCCCAAACAGGCTAGCAAGTTTGATAAGCTTCCCTTGAAGATTGTAAGAAAGAAGGATCCATTTGTGGTGGACTGCTCGAATAAGCTTGGCCGATTGCAGGAATTTGACAGCGGCCTTCTGCACTGGAGTATCGGTGGAGGTGATACAACAGAACACATCCAAACCCACTTTGAAAGCAAGATGGACCTGTTGCACCATCGGAAGCATCTTGCTGCCCAGGTCCCAGACAGAAAGAGAGGAGCTCAGAAGGACAGCCAGGCACCTTCACTGCCCTCATCCAGTGAAGAGCAACGAAAAGAAGTGGATCGGCAGCCTTCTCCAGAGTCATCCACTGAGAAAGTGACCAACGGAATTTCAGATTTGAGGGAGGACAGACCTGCTGACTGCTTAGAAACTGCCTCTGAGGGGACATCACACATAGACAAAGATCAAGAGAAAAAAGTATCAGAGGTGACAACTCCAGAAAACATTAGGCCAGCACCTCCAAGCCCATCATTACAGGGTCAGCGCTCCATTGCCATTTTAGAAGATGAGCCACACAGCAAGGATGAAGCTCCTCTCGTCACGCTCTCAGACTGGCAAGATTCCCTTGCCCGTCGCTGCATTTGTGTCTCCAACATCGTCCGTAGCCTCTCGTTCGTCCCGGGAAATGACTCGGAGATGTCCAAGCACCCAGGGCTGTTGTTATTGCTGGGCCGCTTGCTGCTTCTCCACCATCTGCATCCAGAGCGAAAGCAGGCACCTTTAACCTACGAGAAAGAAGAAGAGGTGGATGAGAGTCTTGGTAGCAAGAAAGATGAATGGTGGTGGGACTGTCTGGAGCTACTGCGGGAAAATTGCTTAGTCACTCTTGCCAACATCTCAGGCCAGCTTGACTTCTCAGTCTACACTGAGAGCATCTGCCTGCCTCTGCTGGATGGCTTGCTCCATTGGGCCGTTTGTCCTTCAGCCGAAGCCCAAGACCCCTTCCCTAGTCTCGGGCTTAATGGCGCCTTGTCCCCCCAGAGACTAGTCCTGGAGACCCTCTGTAAGCTCAGCATTCAGGACAACAATGTGGACCTCATTCTGGCAACGCCACCTTTTAGTAGATTAGAGAAGCTGTTTGGGAACCTTGTGCGTCTAGTTGGAGAGCGAAAGGTGCCTGTTTGTCGGGAGATGGCGGTCGTGCTGCTGGCCAATCTTGCACAGGGTGACAGCCTGGCGGCCCGTGCCATTGCGGTACAGAAGGCCAGTGTAGGGAATCTATTGGGCTTCTTGGAGGACAGCTTAGCGGCTACACAGTTTCAGCAGAGCCAAGGTTCCTTACTGCACATGCAGGGGTCACACTTTGAGCCAACAAGTGTGGACATGATGCGGCGGGCTGCTCGGGCTCTGCTCGCCCTCGCTAAGGTGGAGGAGAACCACTCTGAGTTTACGCTTTATGAATCGCGGCTACTGGACCTTTCTGTCTCCCCACTCATGAACTCATTGGTGTCCCATGTCATCTGTGATGTACTCTTTTTGATAGGCCAGTCATGACAGCTGTGCGGAGCTATGGCTCCACCTTCTCTGGTTTTCATACTTCCCCCTTGCCTGTCCTCCCCATTTGCGAGTGGGGATTGAAAGCAGAGAAAATTGACTGTTTCTTGTTTTGTTTTTTTAATTTATGCAAGCCCTTTCATATTACACCCACTGGCCCCCCTTTTCTCCGTGTCTCACTTTGGGAAGGTTGTCACGAATTTGCTGTGGATCATGAACCAGAACCTCAACACACTGACACAAACTGTAACACTGATGCCAACTAGATGACATGGACAGGGACCCCAACTTTTGTGTCCTTGTCTGAGGTGAAAGAACTTTTTATAATAAATAAATGAATAAAATAAATAGCTTGAAAAACAAACTATTTACCAAAGTTGCTGTCTTGTTTACAGTGAGTTTTGGGGTTAATTGTTCCTTTGTTCTCCCCAAGAGGGTGCAAATAATACACAGCTCTTGTTCACATCGACAGGTAGACTCTTCATTGTTTGGTGGTTGTATTTTGATGCTACACGGTCAGCTTTTCTGGATGCGTGTACAGCAGAAATGAGTTGTCATTTTCTGTACAGTACTCCACAACTGTAAACATACTGCAAACATACTGCACTGTTCCACATTGGGAAAATGTTGGCTCAGTCGGCTCCATTTTTAAACAGTTTTTAAACCATTAGTTTGCTGGTGAGGAGAATAACCCCCAAAGTATCAAGGACGTACAACACCCTGACCTCTTCTCTTTAACCCTTGATTGTATGAATTGACCCCTATAAAGAAATCACCTTCTAGGACTGGTTTTCAACTTAAGATGCAGCCGAGGCTGTACTGTATATAAGATGTTGTAAATTTAGACCTCCTTTTCTCTTTCTCTCCCTCTATCTTTCACACACTCTCTTGCTTATCCCTTTTTATCTATGAAGAATAAGAGCGGACACTCAAGTTGGGTTAATTGCATCAGAATCCCTAGGTATATAAACTGAACCATCTTTTGGCCTCCACGGTTACTCCATAGTGCAGCAAACAACTGAAATATTTTAATTTCATCTCCTGGTACAACAAAATAACTCTAGATGAAGAAACACAGTTGAGATATTTTTTTCTCCAGTGATATGAATTCTGCATATTTGTATTTCAGACTATGTAGCTTAATGTAAATTCCTTGTTTTTCCCTTTTTGGCTCAATGAATATCATTTATTCACTATGAAATCTTTATACTATATGTTCCACGTGGTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10574326_10578596.mRNA True 4666 mRNA 0.48 8 10574326 10579827

Neighbor

gene id symbol gene type direction distance location
CI01000027_10548922_10551337 GPN2 coding upstream 22674 10548922 ~ 10551652 (+)
CI01000027_10545286_10547348 NA coding upstream 26432 10545286 ~ 10547894 (+)
CI01000027_10526694_10541815 GNL2 coding upstream 32196 10526694 ~ 10542130 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding upstream 125971 10437783 ~ 10448355 (+)
CI01000027_10408345_10410012 NA coding upstream 163964 10406096 ~ 10410362 (+)
CI01000027_10580514_10590458 ZDHHC18A coding downstream 364 10580191 ~ 10590903 (+)
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding downstream 30025 10609852 ~ 10617522 (+)
CI01000027_10641759_10654240 TCEA3 coding downstream 61621 10641448 ~ 10654240 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 coding downstream 81583 10661410 ~ 10669742 (+)
G144300 NA non-coding upstream 19047 10554964 ~ 10555279 (+)
G144285 NA non-coding upstream 48966 10525072 ~ 10525360 (+)
G144275 NA non-coding upstream 72083 10502015 ~ 10502243 (+)
G144266 NA non-coding upstream 86525 10487373 ~ 10487801 (+)
G144265 NA non-coding upstream 86985 10487140 ~ 10487341 (+)
G144305 NA non-coding downstream 18227 10598054 ~ 10598262 (+)
G144296 NA non-coding downstream 41381 10621208 ~ 10636932 (+)
G144298 NA non-coding downstream 60397 10640224 ~ 10640459 (+)
G143033 NA other upstream 844775 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2313500 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2542285 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2622384 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3102612 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010074 arid1aa coding NC_007127.7 CM002900.2 33953644 ~ 33986796 (+)
rainbow trout (Oncorhynchus mykiss) G251881 NA non-coding NC_048567.1 CM023221.2 36664757 ~ 36681878 (+)