CI01000027_10545286_10547348


Basic Information

Item Value
gene id CI01000027_10545286_10547348
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10545286 ~ 10547894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10545286_10547348.mRNA
ATCACCAGTCAGAAGAAAGGACAGATCGCCAGCGAGAAGAGACCGTCCATCGGGCAGACAACAGGAGAGGTCACCTCGAGCCCGGAGGAGCAGAAGCCCGCATCGCAGCACCGACGTCAGGTTAAAGCGGATACCAATACATTCAGGGGGGTGGTGATCAAGTATAATGAGCCTCCCGAGGCCCGTATCCCTAAAAGAAGATGGCGTTTGTACCCCTTTAAGAATGACGAGCCACTTCCAGTCATGTACATCCACAGACAGAGTGCGTATCTACTTGGACGACAGAGGAAGATTGCAGACATTCCTATCGACCACCCTTCTTGTTCCAAACAGCATGCTGTTTTTCAGTACAGATTAGTGGAGTTCACACGGGCGGACGGCACCACGGGCAGGAGAGTGAAGCCGTACATCATCGATCTGGGTTCTGGTAACGGCACCTACCTAAACAATCAGCGTATAGATCCTCAACGTTACTACGAGCTCAAAGAAAAAGATGTACTGAAGTTTGGCTTCAGCAGCAGAGAGTATGTGCTCCTTCATGAGTTCTCTGACACAGCTGAGGTTGATGCAAAGAAGGAGGAAGAAGACGATGAAGGCCTGGATGAGTAGTTCTCAGGCCAACGTTTACCAAAGTTACCTGTTTTGTGCTGGACTCTTTGAAAGAATTTCCTGTAGGAACAGGACGAGCGTAAATTGCTCAGTAATTCATAATTTTCTTTTGGACAATGAAACAGTCACGCTTCAGCCTGACCAAGTTGTCTGTATGACTTTATTCTCAGGTGGATAGCTTTTGTATCCCGTCAAACTGTGTACATTGTTGTCCCTCAAAGCAAGTGCTCAATGCCAGAACTAATTAATCTATCCTCAAAAAATCATATATTTTGGATACTCGAAGTAGTGAATATAATGTCCAGATTTGGTTACTGTAAATATTACTGGATGTATTTGATGTGCTTGTTTCATGTGTTTTCATTTATAGTCTGTAAGTAGAGACATGGTTAGTTAGCGCCAGCAAGTTAATCATCCTCATGGTTATTCAGAAAATACTGAGACTAATTTGAATATTGCTATACAAAAGATGCCATCTTTCTTTAGATATTTTCTATTCTCTCACAGTACAGTCGTATTTGATTTTTAGATGTTTTGTATTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10545286_10547348.mRNA True 1155 mRNA 0.43 3 10545286 10547894

Neighbor

gene id symbol gene type direction distance location
CI01000027_10526694_10541815 GNL2 coding upstream 3156 10526694 ~ 10542130 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding upstream 96931 10437783 ~ 10448355 (+)
CI01000027_10408345_10410012 NA coding upstream 134924 10406096 ~ 10410362 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding upstream 173981 10368407 ~ 10371305 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding upstream 439978 10098712 ~ 10105308 (+)
CI01000027_10548922_10551337 GPN2 coding downstream 1028 10548922 ~ 10551652 (+)
CI01000027_10574326_10578596 NA coding downstream 26432 10574326 ~ 10579827 (+)
CI01000027_10580514_10590458 ZDHHC18A coding downstream 32297 10580191 ~ 10590903 (+)
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding downstream 61958 10609852 ~ 10617522 (+)
CI01000027_10641759_10654240 TCEA3 coding downstream 93554 10641448 ~ 10654240 (+)
G144285 NA non-coding upstream 19926 10525072 ~ 10525360 (+)
G144275 NA non-coding upstream 43043 10502015 ~ 10502243 (+)
G144266 NA non-coding upstream 57485 10487373 ~ 10487801 (+)
G144265 NA non-coding upstream 57945 10487140 ~ 10487341 (+)
G144251 NA non-coding upstream 85720 10459325 ~ 10459566 (+)
G144300 NA non-coding downstream 7070 10554964 ~ 10555279 (+)
G144305 NA non-coding downstream 50160 10598054 ~ 10598262 (+)
G144296 NA non-coding downstream 73314 10621208 ~ 10636932 (+)
G144298 NA non-coding downstream 92330 10640224 ~ 10640459 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 non-coding downstream 113777 10661410 ~ 10669742 (+)
G143033 NA other upstream 815735 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2284460 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2513245 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2593344 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3073572 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location