CI01000027_10368925_10370031 (POU3F1, POU3F1.L, POU3F1.S)


Basic Information

Item Value
gene id CI01000027_10368925_10370031
gene name POU3F1, POU3F1.L, POU3F1.S
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10368407 ~ 10371305 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10368925_10370031.mRNA
CTATATAAACATCTTTTAATGTATCATACTGATTTTCATCTTTCTCGTGGGTGGCTCCTGAGATACTTTAGAATACTAATCTACTTGCAAAGAGGAGCGGTACAGTTACTAAAAGAGGCAATGCAAGGCGGGTCATTCTTCCACCCCACCAAAAAGAGTACCACACTCCCCCACGTGGTTATTTGCAAAACAACCCTCAAAGGCCAGTAATTTCCTACGGTTTTGCTGCTCGCGCTCTCTTGACTAGTGGGGAGAGGAGAAGAAAAGGAAAAAAGAAAAAGCGTCTAGTGAAAGCGGCCAATTGCTAGTAACTGGGATCACGGCGCCCGGCAGCCAACCAAGCGGCCCGCGAGAGGTAATAAGGAAACCTGGTGGGCTGTAGTCGGCGAGGAACCAATGCACGCGCAGGGGAGGCGTGTCTTAGCTCTTCCCTAAGACCTCCCAGAGCAGGTTGTTGCGTTTTGGGCTCTAAAGCTCAAAGATCTCCGAAGTGCTTGTCAGTTTTCTAAGTCGGAGCCATGGCGACAACAGCTCAGTATATTCCGCGGAATAACTCATTGCCTTCGAACCCGCTAATGCATCCGGATTCGGACAGGATGCACCAGGGGACGACCTACAGAGAGGTGCAGAAAATGATGCACCACGAGTACTTACAAGGGCTAGCGACCAACACGGGACATCCGATGAGCCTAACGCACCACCAGTGGCTGCCAACCTCCAACACCGACTGGACCAGCGGCACCCACATCGGGCAAGCGGAGCACAACAAAGCCAGCGTGCAGAGCAGAGAAGACCTAGGGAACGGCTATCACAGATCGCATCTGGTCCACCAGCCGACGCAAAACAGCCACCACGGATCATGGGCGCCGACTACAACGCACCACTTATCCCCGCTCTCTCCCGCCTCCAACGGTCACCAGTCGCTGGTCTACTCGCAGACGGGCTACACTATGTTAAGCCCCCAGCCGTCGCTGCATCACGGCTTGCGGGACCCGCTCCACGATGACGCGGGTAGCCATGACAACCAGATGGAGTCGCCTCAGCAGCCGTTCAGCCACCACCAGGACCACTCGGACGAAGACGCCCCCAGCTCCGACGACCTGGAGCAGTTCGCCAAACAGTTCAAGCAGAGGCGCATCAAACTTGGTTTTACGCAGGCGGACGTGGGCTTGGCGCTGGGCACGCTCTACGGAAACGTCTTTTCCCAGACCACCATCTGTAGATTTGAGGCTCTGCAACTGAGTTTCAAGAACATGTGCAAACTTAAACCTCTGCTTAACAAATGGCTCGAGGAGACAGATTCAAACACTGGCAGCCCCACGAATTTGGACAAGATTGCAGCACAGGGCCGGAAACGAAAGAAGAGGACCTCCATCGAAGTCGGAGTGAAAGGGGCACTGGAAAACCATTTCTTAAAGTGCCCCAAGCCCTCCGCCCACGAAATCACCACTTTAGCTGGCACTCTGCAGTTGGAAAAAGAGGTTGTGCGTGTGTGGTTTTGCAACAGAAGACAGAAAGAGAAAAGAATGACACCGGTGGGGGTCCCTCATCCGACCATGGAGGACGTATACTCACAAGCGGAGACACCCCCTCTCCACCACACACTACAGAGTCCTGTCCAGTGACTGCTATCATAAACAGTGTCCTTGTTTGAAAAGAAACTACAATGGATTTTGTTTATCCCCTTTGTTTGTCCCAAGAGATCAGAGACAGAAAGTTTGGGAAGAGTTCGCTGACAGTGACCGGACAGCTTACGGGGCGCCACTAATTCTGAATAACGTGAAAATGCATTAAGTACCGCGCCAGCTTCGCGTGCATTTATCAAATCAGTACCAGTGTTTACGAAAATTGTATCGTTTGTGCCACTCTGGAAAAATTCGATTCTTTCACCGCCGATAAAAGGGAGCTACGAGCCACAAAAAGGGGCAATGTCTCCTTGGACAAAGGAGAATGGACAGTGATTTTCTTAAAGCGATTAACCAGATTAATTATTACAATGATTATCTGTATTATTTGTGTTGTTTACTTTATTTCGAATGTTTTAACGCTAAGATATTTTCTTTTTCCTGTCTAGCGAGTATTTTACTATCATTTCAACTAAGACAGATGAAATTCGTGATGTAAAGAACAGGCACTTGGTCAAAACCTTCAATACAAACAAGTGCACCAGGAACTGTTTACAATGATCATTTTTAAGCACCTATATCGTCTAAAGATGCAGAGACGTTAAAATGGCAACATGAATACACTGTCTGAAACAATATTTAGTCATTTTGAGTTCTACTGCTCTCATTTTTTCCTCTTTGCATGAGGCACTTATAATAATGTTATTTTAATTTCTTTTCATGTTTGTTTTTTTTGTTTTTTACAATGTATTTGTTCGAGGTATACGACATTAATGCTTTACTTGTTTACAATTTTCTTTCCCAATTTCGCGTTATTTTGAACCGGCACTATTTCCTAAGTCTGCTCCAGCTAAACATATTGAGAGTGATGAGTCAAAATGAAAAAGAAAGAAATATCTCAGGTAATTTTCAGTGCCCAAAAATCGTGCTGTACTCTTAGTTCTTCTTGAATATTGGCCAACTCTTGACACTCTCTATGTCAGCTGTGCCCGTTTAGTTTATGTTTCTTACATTTTACATCCTATTCATGAGCCTGGACACGGAGAAAAGTAGTTGTTTTAGTGAATAAGGGATGTGTTTTCGGGACTTCTTTTCAGGATTTGGGTAAAAAAAAAAAAAAAAAAAAGGCTGGTAACGTTTCGTGTCGTTTCTCAAGGTCTGGCATTTTTCATTGGACAGCAGGTGTTCATTTTGTTATTTGAACAGTGTGAATATACAACCTTTTCCAAAAAAGTAATAAAAATAAAAATAAATTACGAGAGAAAAGATTTTAA

Function

symbol description
pou3f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development; cell differentiation; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including forebrain neural rod; hindbrain neural keel; nervous system; neural plate; and presumptive diencephalon. Orthologous to human POU3F1 (POU class 3 homeobox 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10368925_10370031.mRNA True 2899 mRNA 0.46 1 10368407 10371305

Neighbor

gene id symbol gene type direction distance location
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding upstream 263099 10098712 ~ 10105308 (+)
CI01000027_10090545_10093306 CX55.5 coding upstream 274661 10090545 ~ 10093746 (+)
CI01000027_10072946_10084310 RHBDL2 coding upstream 283841 10072437 ~ 10084566 (+)
CI01000027_10055186_10067131 AKIRIN1 coding upstream 301276 10055186 ~ 10067131 (+)
CI01000027_10048220_10051640 NA coding upstream 316663 10048127 ~ 10051744 (+)
CI01000027_10408345_10410012 NA coding downstream 34791 10406096 ~ 10410362 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding downstream 66478 10437783 ~ 10448355 (+)
CI01000027_10526694_10541815 GNL2 coding downstream 155389 10526694 ~ 10542130 (+)
CI01000027_10545286_10547348 NA coding downstream 173981 10545286 ~ 10547894 (+)
CI01000027_10548922_10551337 GPN2 coding downstream 177617 10548922 ~ 10551652 (+)
G144029 NA non-coding upstream 175746 10192458 ~ 10192661 (+)
G144020 NA non-coding upstream 186870 10181333 ~ 10181537 (+)
G143258 NA non-coding upstream 218043 10150117 ~ 10150364 (+)
G143252 NA non-coding upstream 235737 10132471 ~ 10132670 (+)
G143246 NA non-coding upstream 253396 10114774 ~ 10115011 (+)
G144121 NA non-coding downstream 7527 10378832 ~ 10379050 (+)
G144125 NA non-coding downstream 17577 10388882 ~ 10389100 (+)
G144063 NA non-coding downstream 31377 10402682 ~ 10403359 (+)
G144251 NA non-coding downstream 88020 10459325 ~ 10459566 (+)
G144265 NA non-coding downstream 115835 10487140 ~ 10487341 (+)
G143033 NA other upstream 638856 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2107581 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2336366 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2416465 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2896693 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010068 pou3f1 coding NC_007127.7 CM002900.2 33593116 ~ 33595985 (+)
bowfin (Amia calva) G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding CM030133.1 CM030133.1 4288023 ~ 4290680 (+)