CI01000027_10072946_10084310 (RHBDL2)


Basic Information

Item Value
gene id CI01000027_10072946_10084310
gene name RHBDL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10072437 ~ 10084566 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10072946_10084310.mRNA
ACATAAAAAGCACTTATTTTTGCTCAGTTTAAATGCAATTTCTAAACATTTATAGAAAACGCGCTCAATAGACCACATCATCACTTAAAAAAGAAAACGAAAAACAACCTGTATTTCAGGTTACAGAAATACAGGTTTCTGTAACCTGAAATATATTAATTACTCTTACAATTTGTTTCCCCTTATAAAGTTGTTTCTAAAATGAAAAGCATATAGCCTATAGTAACCTCGTAAATAATTCCATACAGGATGAGTTTGTTTATGCAGGAAGAGCCAATAACTCCGGAAGAGAGAGAGCCTCTGAAAAACGTGGAGATGAAATCTATATAGCTTTGAAATACATTTTAGATTTCTTTTAAGTTTGCTTTTGCTCTGTTACAATTGCCAAGGTTACTAAAAACTTTTCTGTTAGCCTAATGAAATAATAAAAATAAAAACTGTAATTCCTTTTGTTCATTTTTGTCAATTACTCTAAAAAACGACCCTTTTGATTTGCATTTTTAAGAGAAATGGGCGATAATGACATCGAAGAGCAAGACAGTTTTCCCGTAGAGAGGGATGAAGAAGGTGGTGATCGAGCAAATCCGAAGAGAAGAGGTCGCAGGGTAGAAAAGATACAGAAGAATGTTTCGAAATGGATGCTTCCCGAGGAGTTACGGGAGACGTATTTGGAGCGAGCGAACTGCTGTCCGCCACCAATCTTCATCATCCTCATCAGCTTAGCGGAGTTAGGAGTGTTTATCTACTATGCGGTATGGAAGCCTCAAAAGCAGTGGATAACCCTGGGTACAGGAATCTGGGACAGTCCTCTTACCTATAAGCCCGAACAACGCGAGGAGGCATGGCGGTTTTTCTCCTACATGTTTGTACATGCCGGGGTGGAGCATATCATGGGAAACCTGTTAATGCAGCTTCTTCTTGGCATTCCCCTGGAGCTGGTGCATAAGGGCTTTGAAGTAGGCATGGTCTATATGGCAGGAGTCCTTGCAGGCTCTCTTGCCAGCTCCATCTTTGATCCTCTCAGTGCTCTTGTGGGTGCTTCGGGAGGTGTTTATGCCCTCATGGGAGGTTACTTCATGAATGCTGTGGTGAATTTCAGGGAGATGATTCCACTTATGGGAGTGTTTCGCATTCTTGTAATTGTTCTTATTGGTGCGTCCATTTTCACTTTCCACTCTACTATTGGTATCTTATTTGACATCTACTATTGATGTTTGGATAAACTAAGCATTTTGTTCAGACCTATTAACTGGTTAATGAAAATGTTTATGTTTTTTTTTTTTTCTTTTTTTTTTCAGTTGGAACAGATGTTGGATTTGCTATTTACAGAAGGTTCTTTAGCCACGACGCTGCCATGAAGGTGAGGCAGTTTTAAGATCATAGCAGAATCATAAGCCATATATTTAAATATATTATTTAAACCAGAATACCTAATACTCAACTAGAATGATTTAGACTACAAGCTTA

Function

symbol description
rhbdl2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; otic vesicle; pectoral fin; pharyngeal arch; and sensory system. Orthologous to human RHBDL2 (rhomboid like 2).

NR:

description
LOC792002 protein, partial

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10072946_10084310.mRNA True 1467 mRNA 0.38 5 10072437 10084566

Neighbor

gene id symbol gene type direction distance location
CI01000027_10055186_10067131 AKIRIN1 coding upstream 5306 10055186 ~ 10067131 (+)
CI01000027_10048220_10051640 NA coding upstream 20693 10048127 ~ 10051744 (+)
CI01000027_09958003_09959274 NA coding upstream 112175 9955825 ~ 9960262 (+)
CI01000027_09931428_09937694 NA coding upstream 134685 9929615 ~ 9937752 (+)
CI01000027_09783491_09789725 PRDM13 coding upstream 282251 9783491 ~ 9790186 (+)
CI01000027_10090545_10093306 CX55.5 coding downstream 5979 10090545 ~ 10093746 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding downstream 14146 10098712 ~ 10105308 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding downstream 283841 10368407 ~ 10371305 (+)
CI01000027_10408345_10410012 NA coding downstream 321530 10406096 ~ 10410362 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding downstream 353217 10437783 ~ 10448355 (+)
G143195 NA non-coding upstream 28363 10040906 ~ 10044074 (+)
G143205 NA non-coding upstream 59088 10011873 ~ 10013349 (+)
G143159 NA non-coding upstream 174385 9896693 ~ 9898052 (+)
G143156 NA non-coding upstream 207332 9864631 ~ 9865105 (+)
G143034 NA non-coding upstream 362177 9701004 ~ 9710260 (+)
G143230 NA non-coding downstream 6133 10090699 ~ 10090928 (+)
G143237 NA non-coding downstream 22830 10107396 ~ 10107823 (+)
G143240 NA non-coding downstream 23901 10108467 ~ 10108834 (+)
G143244 NA non-coding downstream 29388 10113954 ~ 10114160 (+)
G143246 NA non-coding downstream 30208 10114774 ~ 10115011 (+)
G143033 NA other upstream 342886 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1811611 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2040396 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2120495 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2600723 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010063 rhbdl2 coding NC_007127.7 CM002900.2 33142734 ~ 33154518 (+)