CI01000027_10090545_10093306 (CX55.5)


Basic Information

Item Value
gene id CI01000027_10090545_10093306
gene name CX55.5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10090545 ~ 10093746 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10090545_10093306.mRNA
TGGAGTATTGGTTATTGATGCACTGACATACAGAAGCAGTGCGCTTGCCAACAGACCCCTACATTTGGAAACCTTCTTTCGGTGCCAACAGAGAGGAAAGACGGGGTCACAAAAGTTCAGACTCAAAAATGCCCGAGTGAAAATGGGAGACTGGAACTTTCTTGGTGGGATTTTGGAAGAGGTGCATATCCACTCCACCATGGTGGGGAAGATCTGGCTGACCATCCTCTTCATCTTCCGCATGCTAGTGCTTGGGGTGGCAGCCGAGGATGTGTGGAATGATGAACAGGCTGACTTTATCTGCAACACCGAGCAGCCTGGTTGCCGCAACGTGTGCTACGACAAAGCATTCCCCATTTCCCTTATCCGCTATTGGGTGCTGCAGGTCATTTTTGTGTCTTCACCTTCGCTGGTGTACATGGGCCATGCCCTCTACCGCCTCCGTGCCCTCGAGAAAGAGCGACAGCGCAAAAAGTTAACACTGAGACGTGAACTTGAGGCCGTGGACGTGGAGATGGCAGAGGTACGACGCAAAATAGAACGTGAGCTTCGGCAGATCGACCAGGGGAAGCTGAACAAAGCTCCGTTGAGGGGGTCCCTTCTGCGCACCTACGTGGCTCACATAGTCACCCGCTCTGCTGTAGAGGTGGGCTTCATGACCGGACAATATGTTCTGTATGGGTTTCAACTAAATCCGCTGTACAAATGTGAGCGGGAGCCCTGCCCAAACGCGGTGGATTGCTTTGTATCTCGACCCACTGAGAAAAGTGTCTTCATGGTGTTCATGCAGTGCATAGCTGCCATCTCATTGTTTCTCAACATTCTGGAGATCATGCACCTGGGCTATAAGAAGCTTAAAAAAGTCATTTTGAACTACTATCCACACCTGAGGGACGATCCCGATGACAGCTACTATCCCAACAAGCTGAAGAAAGATTCCGTTGTCCATCAGACATGCATCGGCACCTCGACTGGCCACAAGGCCACCATTGCTTCTGCACCCAGTGGGTACAACCTTCTGCTTGAGAGACCACCTGATGAAACCGGCTACCCTCCTCTGATTAACCCATCCTCTGCTTTCTTGCCAGTTCAGGGTGATTTGCCAGCTAAAAACGGTTCTGATGCACCAAAGTATTCGCAGCACAGTCCCACAGAGCACAACAGCAATTCCAACAACACCAGCAGTGATACGCGCTCGCCACCTTGCAACTCCGTCACGCCACCAAAGCAAGATGAGGGGGAAGATTCTGTCCAGCCTCCACCTACGCACAAGAAAGGGCAGGAGTCCAAGACTCCAGACTCATCAAGCCATCCCAGAGAATCTTCTCACTCTTCATCCGGCGTAGGAAAGAAGCCATGGAAGGTCAGCGCACCCTGGAACTGCTCAACGGTTGTAGAAGGTAATGGCTCTGACTCGGATTCCCTGGAAGGCGCTAAAGCCCGCTGTCCCTACTCCACTGTGCGGGCACGTACTTTGTCCAGGTCTGAATCCAAGCGGAGCAGGCCCACCTCTCCTGATTCAATAGAAGAATCCAGCTCTGAGTCAAGGCATAGCCCACGAGTGTCACCAAGCCATCGCGCCTCATTGGCCAGCAGTTCCAGTAGCAGACGAGCTGCTCCCACAGACTTACAGATATGAGAAAAACTCATGGATGATAGCCATGTAATTTTTGCAGTTATAAATTGATGGAAATTGACCAGAGTGACTGTAAAATTAACATCTACAACTTAGCACGGAAGCAATCTCAGACTAAAGTTTTATATTTAACTTTATAAAGTGGTGGCACTCCTTAATGGATTGTTTACACTCTACTTTTATATACATATCACACAGTATTTATTAACAATAGTAGTATGACTAATACAGGACAATGGATTGCATGTTTAATTATGTATGCCTTCTGGACATTTCTCTTTTTGACTGCTTCCTGCATCAGAAGTAAAAATGGTGTAATGGTAAAAAAGAAATCACAATTTTAAAACACATAGTGCTTACTTAGAACAGCTGTAAAAATCTTCAAAAATATGATATTGTAAAAAAAAACTGTTATATCTGCATGTCATAGCAAATACAGCTAA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process

KEGG:

id description
K07618 GJA9; gap junction alpha-9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10090545_10093306.mRNA True 2079 mRNA 0.48 2 10090545 10093746

Neighbor

gene id symbol gene type direction distance location
CI01000027_10072946_10084310 RHBDL2 coding upstream 5979 10072437 ~ 10084566 (+)
CI01000027_10055186_10067131 AKIRIN1 coding upstream 23414 10055186 ~ 10067131 (+)
CI01000027_10048220_10051640 NA coding upstream 38801 10048127 ~ 10051744 (+)
CI01000027_09958003_09959274 NA coding upstream 130283 9955825 ~ 9960262 (+)
CI01000027_09931428_09937694 NA coding upstream 152793 9929615 ~ 9937752 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding downstream 4966 10098712 ~ 10105308 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding downstream 274661 10368407 ~ 10371305 (+)
CI01000027_10408345_10410012 NA coding downstream 312350 10406096 ~ 10410362 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding downstream 344037 10437783 ~ 10448355 (+)
CI01000027_10526694_10541815 GNL2 coding downstream 432948 10526694 ~ 10542130 (+)
G143195 NA non-coding upstream 46471 10040906 ~ 10044074 (+)
G143205 NA non-coding upstream 77196 10011873 ~ 10013349 (+)
G143159 NA non-coding upstream 192493 9896693 ~ 9898052 (+)
G143156 NA non-coding upstream 225440 9864631 ~ 9865105 (+)
G143034 NA non-coding upstream 380285 9701004 ~ 9710260 (+)
G143237 NA non-coding downstream 13650 10107396 ~ 10107823 (+)
G143240 NA non-coding downstream 14721 10108467 ~ 10108834 (+)
G143244 NA non-coding downstream 20208 10113954 ~ 10114160 (+)
G143246 NA non-coding downstream 21028 10114774 ~ 10115011 (+)
G143252 NA non-coding downstream 38725 10132471 ~ 10132670 (+)
G143033 NA other upstream 360994 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1829719 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2058504 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2138603 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2618831 7468964 ~ 7471999 (+)

Expression


Co-expression Network