G143205


Basic Information

Item Value
gene id G143205
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10011873 ~ 10013349 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162702
TTGTATGAAAACATAGTTACATTTATCTATCTAGCTAGCTATAGTGCTGAAAATCTATATTGTCCAACCTATATTGCACATGATAGATAGATAGATAGATTAATGTGTTAAGTGATATGTAGCTATATGTAGCAAATTTGTAAATTTTAAAGATACTGTACTCTTCTCAGTGTTGATAGATTTGCATATCTATCTATATATCACTTAAAATGTCCATCTATCCTTTAAGTTTCATATATACAGATTATTTGTATGAAAATGCATTCAATTTCATACCAAATAAATGGCTTTCCAGACAAATTACTTGGAAGAGTGTGATAAATAGTCTGTTCTGTTTCCTTTCAGGCCATACAGTGGACGGAAGCCATGTTCTCTGTTCATTCTGGTGTCTCTCTGCTTAGTGACAGACACACTGTGAAATGAGGGCCCATTAGTCACAGAGCAATTGCATATCTCCATTCCACAATACTGACACCAAAACAGCACTACAGGCCTTTCTAACCAATCGAATCCAGTGGTATTTGATGACCTTTGAGGAGCCACTGCATGAACATGATGGGCAAAGTCCCATCACCTCGTGCGTGGTCGCTTTACACACCGCACGAGCCACCTCGGATCCCGTGAGGCTGTACTGCGCCGCGGCGATGCGGTCCGTCAAAGTCTGGCCCGACATCTTTCTTCTCTTGCGGAATTAAACGCCCTTATTCCCGTATAAAGAGACGCGTCGAGTAGCTCCAAAGCGTCCAAAGGATGAGGCCCTTTAAAATGGACTCTCGACCACAATTTGCGATATTAATATTATGTTATTGTTATCAAAACCAAGCTTAGATGAAGTCTTTACCATGGATGATGAGCAACGGACATACCTAAGGAAATACTAAAACATACAGAGCGAGACTCCGTGTTTACTATAATATAAATTTCAGGTCAACGCCTGCGCTGTGTATTCCCCTCGTGGGGATGCGGGATCATACAAGAGATGCGTAACGAGTATTTCAACCGCAAACAGTTATTAAAAAGAGAAAACGAAGAGCTTGAATGTTATAACAGACTAATTTTATGAAGTCCTAAAAGATATTCCTCGTTATTTCCACTCTGTATTGGAGGAGGCTGTTAACGAATGATGCTCTGCTCGAACAGTCGTCCTTCTCTCCTCCTCCAGATCAAGGATTAATCTTCCCGACAAACCCCGCTGGATGTGCAGTCACCCAAACCTTCAAACTGCTTGCGTTGTTCTCCTCATCTCTAAAAAACGCTCGCCTTACTTTTCATTCACCCTGTGGCTATGTCCAGTTTCGGACAATTACTGAACAAGGAAGATGAAACGCAGCGATAACGGGAAGCCGCGGTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162702 True 1354 lncRNA 0.42 2 10011873 10013349

Neighbor

gene id symbol gene type direction distance location
CI01000027_09958003_09959274 NA coding upstream 51611 9955825 ~ 9960262 (+)
CI01000027_09931428_09937694 NA coding upstream 74121 9929615 ~ 9937752 (+)
CI01000027_09783491_09789725 PRDM13 coding upstream 221687 9783491 ~ 9790186 (+)
CI01000027_09774092_09779035 NA coding upstream 232744 9773992 ~ 9779129 (+)
CI01000027_09767653_09768743 NA coding upstream 242471 9767653 ~ 9769402 (+)
CI01000027_10048220_10051640 NA coding downstream 34778 10048127 ~ 10051744 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 41837 10055186 ~ 10067131 (+)
CI01000027_10072946_10084310 RHBDL2 coding downstream 59088 10072437 ~ 10084566 (+)
CI01000027_10090545_10093306 CX55.5 coding downstream 77196 10090545 ~ 10093746 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding downstream 85363 10098712 ~ 10105308 (+)
G143159 NA non-coding upstream 113821 9896693 ~ 9898052 (+)
G143156 NA non-coding upstream 146768 9864631 ~ 9865105 (+)
G143034 NA non-coding upstream 301613 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 329106 9682526 ~ 9682767 (+)
G143093 NA non-coding upstream 418466 9592745 ~ 9593407 (+)
G143195 NA non-coding downstream 27557 10040906 ~ 10044074 (+)
G143230 NA non-coding downstream 77350 10090699 ~ 10090928 (+)
G143237 NA non-coding downstream 94047 10107396 ~ 10107823 (+)
G143240 NA non-coding downstream 95118 10108467 ~ 10108834 (+)
G143244 NA non-coding downstream 100605 10113954 ~ 10114160 (+)
G143033 NA other upstream 282322 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1751047 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1979832 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2059931 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2540159 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010849 snap91a coding NC_007127.7 CM002900.2 33005688 ~ 33060053 (-)
tiger barb (Puntius tetrazona) LOC122360295 NA non-coding NC_056714.1 CM032083.1 23786828 ~ 23802584 (+)