Gene
RNA
| Item | Value |
|---|---|
| gene id | G143159 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 9896693 ~ 9898052 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU162641 | True | 1335 | lncRNA | 0.43 | 2 | 9896693 | 9898052 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_09783491_09789725 | PRDM13 | coding | upstream | 106507 | 9783491 ~ 9790186 (+) |
| CI01000027_09774092_09779035 | NA | coding | upstream | 117564 | 9773992 ~ 9779129 (+) |
| CI01000027_09767653_09768743 | NA | coding | upstream | 127291 | 9767653 ~ 9769402 (+) |
| CI01000027_09661837_09663114 | POU3F2B, POU3F2 | coding | upstream | 232836 | 9661523 ~ 9663857 (+) |
| CI01000027_09562530_09572606 | NA | coding | upstream | 324058 | 9562496 ~ 9572635 (+) |
| CI01000027_09931428_09937694 | NA | coding | downstream | 31563 | 9929615 ~ 9937752 (+) |
| CI01000027_09958003_09959274 | NA | coding | downstream | 57773 | 9955825 ~ 9960262 (+) |
| CI01000027_10048220_10051640 | NA | coding | downstream | 150075 | 10048127 ~ 10051744 (+) |
| CI01000027_10055186_10067131 | AKIRIN1 | coding | downstream | 157134 | 10055186 ~ 10067131 (+) |
| CI01000027_10072946_10084310 | RHBDL2 | coding | downstream | 174385 | 10072437 ~ 10084566 (+) |
| G143156 | NA | non-coding | upstream | 31588 | 9864631 ~ 9865105 (+) |
| G143034 | NA | non-coding | upstream | 186433 | 9701004 ~ 9710260 (+) |
| G143110 | NA | non-coding | upstream | 213926 | 9682526 ~ 9682767 (+) |
| G143093 | NA | non-coding | upstream | 303286 | 9592745 ~ 9593407 (+) |
| G143075 | NA | non-coding | upstream | 338313 | 9558122 ~ 9558380 (+) |
| G143205 | NA | non-coding | downstream | 113821 | 10011873 ~ 10013349 (+) |
| G143195 | NA | non-coding | downstream | 142854 | 10040906 ~ 10044074 (+) |
| G143230 | NA | non-coding | downstream | 192647 | 10090699 ~ 10090928 (+) |
| G143237 | NA | non-coding | downstream | 209344 | 10107396 ~ 10107823 (+) |
| G143240 | NA | non-coding | downstream | 210415 | 10108467 ~ 10108834 (+) |
| G143033 | NA | other | upstream | 167142 | 9728815 ~ 9729551 (+) |
| CI01000027_08255251_08264629 | NA | other | upstream | 1635867 | 8255073 ~ 8264897 (+) |
| CI01000027_08026500_08029412 | ENSAB, ENSA | other | upstream | 1864652 | 8025788 ~ 8032041 (+) |
| CI01000027_07947743_07951397 | NA | other | upstream | 1944751 | 7947657 ~ 7951942 (+) |
| CI01000027_07469157_07471720 | NA | other | upstream | 2424979 | 7468964 ~ 7471999 (+) |
