CI01000027_09774092_09779035


Basic Information

Item Value
gene id CI01000027_09774092_09779035
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9773992 ~ 9779129 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09774092_09779035.mRNA
GTATAAAATGCCTGGGCCTCTGAGAGTGTGGATTTGTGAACAGAGCTTGCAAGAGGAAGATCAACAAAGTAAGGCCTAAAAGTTTAGCCACTGACCCATGATGAGTCGCAGCCCAGAAAGGATCTCATCCTATCGCCGCCACTTTGAGGACACCAGAAACTCCTCTTACCAGGTGAGGGTCAGCAGCCCTTCTCCTGTCAGACGGGATGTTGGGAGGTGCCGTTCAGCCAGCTACTCCCGTAATGCCACGGCTGTGAGAAGCAGCATGGCAGTGGGCCGGAGGACCATCTCATCCTCACGCAGCCAGCCCCTCATGACTGGTCTCGGAATGAGGGCCATCTGTCTTAGAGGAGGGGGTCCAGGGGTCGATCTTGACCAGGCTGCTGCCGAAAACCGTGAATTCCTCAGCACACGGACCAACAGAGCACATAACACGCGTACTGTGTTTTCTTATTCTCCTGTCGAAACAAAGGTCCGGTCGCTAGAGCAGCAAAATAAATTGTTGGAGACGGAAATCGAGGCCCTAAAGAATCGATTCTTGAAGCCAACTGGCCTGCGCTTGCTGTACGAGGAGCAACTCAAGGAGCTGAAGAGGCTGGCTGACCAGATGAGAGTGCAGCGGGACCTTGCTATTGCTGCAAAGGATGCTATGGCGGGTCAGTTGGAGATGATTAAGATTAAATATGAGGAGGCCTTAGAGATGAGGAAGAAAGCCGAGCTTGACATTGAAGCTTTCCGTCCGGACGTTGATGCCGCCACCTCCGCGCGCATTGCTTTGGAGAAGCAGCTAGAAAACCTGGAGGTGGAACTAGAATTCCTTCAAAGAGTACACAAACAGGAAATCGACGAGCTTATGAAGCAAATATACTCAGCCCACGCCACAGCAATGGACGTCTACAGTCTCCCCGACCTCTCAGCCGCTCTCAAGCAGATCCAACACCAGTATGATGACATTGCAGCTAAGAATTTACAGGAAATGGATTCTTGGTACAAAACTAAATTTGATGATCTCAACAACAAAACAACAAAACATGTGGACACGTTGCGAAGCGTGAGACAGGAAATTGTCACTGCGAAGAAGGATATTCAAAATAAGGAGCGTGATTTGGACTCTCTGAAAACCAAAAATGAGGCTTTGGAAGCACAGATCCGTGAGACTCAGGAAAAGTACAGAAAAGAACTAGAAGAACTCCAGGCAAGAATTGAGGCCTTGCAGCTTGAGCTGAAATCCTCCAAACAGAGGATAGCGCTCCTCATGCGTGAATACCAAGATCTGCTCAATGTGAAGATGTCCCTCGAGATTGAAATTACCACATACAGGAAGCTCATTGAGGGCGAGGACTCTCGTCTGACTTCCATCGCACAGAGCATGCAAACCATGTCCCTCATGAGCGGCAGCATGAGTGTTCACAGTGCTGGAGCCACAGGTGTTGCAGGTGCCCTGGGTGCAGGAGTTGCGGATACAGTGGGCGGAGGTCTTGCTGGAGGTCTAGGTGGTGGTCCTGCCACAGGTCTTGGAGGAGGCATTGGTGGTGGCCCTGCCACAGGTAATGGCGGAGGTCTTGTTAATGGGATCACCAGTGGGGTTGGCGGCCCAGGCACCACTGCTGACTACACTCAAGAGCAGGCTGTGGAGATGACTGAGAGGAAGACTGTGCTTATCAGAACAGTTAAAACTGAGGATGATACGCTGGAGAGCAATACACAGGAGAAATCTTATTCCATCTCTGGAGCAGCAGATGATGAAGAGTAGTGGTGTTTTCTGCTCACCAGTCCTGCCTGCAGATGCGTGTGCCTTACTACTCAAATATCAGCTTGCGTCTTGCACTGCTTGTCCACAAATGGAA

Function

NR:

description
Zgc:194470 protein, partial

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09774092_09779035.mRNA True 1847 mRNA 0.51 11 9773992 9779129

Neighbor

gene id symbol gene type direction distance location
CI01000027_09767653_09768743 NA coding upstream 4590 9767653 ~ 9769402 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding upstream 110135 9661523 ~ 9663857 (+)
CI01000027_09562530_09572606 NA coding upstream 201357 9562496 ~ 9572635 (+)
CI01000027_09484034_09501412 KLHL32 coding upstream 271737 9484034 ~ 9502255 (+)
CI01000027_09459448_09462994 NA coding upstream 310892 9459448 ~ 9463100 (+)
CI01000027_09783491_09789725 PRDM13 coding downstream 4362 9783491 ~ 9790186 (+)
CI01000027_09931428_09937694 NA coding downstream 150486 9929615 ~ 9937752 (+)
CI01000027_09958003_09959274 NA coding downstream 176696 9955825 ~ 9960262 (+)
CI01000027_10048220_10051640 NA coding downstream 268998 10048127 ~ 10051744 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 276057 10055186 ~ 10067131 (+)
G143034 NA non-coding upstream 63732 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 91225 9682526 ~ 9682767 (+)
G143093 NA non-coding upstream 180585 9592745 ~ 9593407 (+)
G143075 NA non-coding upstream 215612 9558122 ~ 9558380 (+)
G143066 NA non-coding upstream 295806 9476391 ~ 9478186 (+)
G143156 NA non-coding downstream 85502 9864631 ~ 9865105 (+)
G143159 NA non-coding downstream 117564 9896693 ~ 9898052 (+)
G143205 NA non-coding downstream 232744 10011873 ~ 10013349 (+)
G143195 NA non-coding downstream 261777 10040906 ~ 10044074 (+)
G143230 NA non-coding downstream 311570 10090699 ~ 10090928 (+)
G143033 NA other upstream 44441 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1513166 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1741951 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1822050 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2302278 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location