CI01000027_09783491_09789725 (PRDM13)


Basic Information

Item Value
gene id CI01000027_09783491_09789725
gene name PRDM13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 9783491 ~ 9790186 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_09783491_09789725.mRNA
GAGCCCAAAGAGAAGGCTCCCAGAAAGGAGCAGTGGGGTACATTTTCCTGAAGAAAGAAATCCCACCTCTGCTTCTCCAATTACAGCAGAGTGTCATCGCAGAGTCGCCAGGGCAGAGTGCCTGCTTGGTCGTCCTGGTTCTGATAGCTCAGCCCCACGCAGAGCTAGCCATGCAAGCGACTCGGACACCCACTATCAGTGTGTTCGCCGACTGCAGCATCCCAGCCGGGCTTCGGATAGGTCCGGTCCCGGGCATCTTTAAACTGGGGAAGTATGTTTCGGACCGCAAGGAAATTGGAGTGAAAAAGAAGATCCGTCTGGTGAGGGGAGAATTCGTGGATGAGTCTGGCAGCGCAGTTCCAGATTGGATCGGGTTAGTACGCGCGGCCAGGAACAGTCAAGAACAGAACCTCGAGGCAGTCTCGGATTTACCTGGTGGACAGATATTCTACCGTGTGATAAGAGAAATACAGACTGGAGAGGAATTGAGCGTTTGGTATTCCAACGCACTGGCGCAATGGTTTGACATTCCTACGACTGCAACTCCAACTCATGACGAAAAAGGCGAGGAGCGCTACATTTGCTGGTACTGCTGGAGAATATTCAAATACCCGAACACTCTGAAAGCTCACGTGCATTTCCACTGTGCATTGAGCAACGGCAGAAGTTTGGTGAGCAACGAGCAAATGAGAGGCACAGACAACTTCAACAGATCTCCGAAATCCGGAGACATCCCGAATACGTCGTCCTCTCCACGGAACGGCCACAGCACCTTCATGTCAGACGCAGTGAAACCGTTCGCCAATAAAGTGGGACTATCCAAAAAAACAAGTGCAGAGGAGCAGGACAGAGCCCTTGACATGAGTGTGACCTCCGCCAGAAACCCCGGTCACATCCTGGGCCTCGGCGGGACATCGTCTGTGCTCAACAGCATGGGTTTCCATCCAGGCGTGCGCTCTGCTTTCAAACCAATGGGACTTTCAAAGATCTCCCCGGCTGAGGTCGCGAGAGATGAACCTAATGTGAAACCAAACAGTATTGGGTTTAGTAAACTGCTTGGAAACATTAAGTCAGTGCGCACCCTAAATGAACCTCTACCAAACGTTCATCCCACAAAATGCGCGCACCCCATGGACAGCACACCTCCCGTGATCCCCTGCGCAAACACCATCCGTGGCTTTCCTCTACTGCCACATTTTGAGGAGACCTCAGCTTTCAAGCACGTTGACAGCCGCATGCACCCTGCCCTGTCGCCCTCGCGCTACTCCCAGCTTCCAGCCGGGTTTCACTTCGAGAGGTTCTCCTTGCCACAGTTTGATGGGGGGAAATCCTACAATGGAGACTGCAACATACCCCTCATGCCATTCACGGTTTACAATGGAGAGCTCCTTTATAGCTCCCCGTACTACCCTCTGAAATTTCACTTCGGCAACCTGCTGAAATACCCAGACTACTTTGGCGCGCCCGCTCTAAATCCAGATCTAAACGCGATTACGAATATCGACAGGGAGATAGCGATGCACACGCAACAGCTGTCTGAAATCGCCGTGGAGAAGAACCGTTCACGGCTGGAGTCTATGCCCGCATCAAACCCAAACTCGGGCAAGCCAAAAAAGGGACATTTGTGTCTTTATTGTGGCAAACTGTACTCTCGAAAATACGGGCTGAAGATTCACATGAGGACTCATACAGGCTACAAACCACTCAAATGTAAAGTGTGTTTTAGGCCTTTTGGCGATCCCAGCAATCTCAACAAACACATCCGACTGCACGCGGAAGGAAATACGCCATACAGATGCGAGTTCTGCGGGAAGGTGCTCGTGCGCAGGCGAGATTTGGAGAGGCACGTCAAATCGAGGCATCCTGGTCAAAGCATTAAAAAATCCGACGACAAAATGGAAGGCATCTTCGAGGACGCCGAGCAAAAGAGCGACAACGACAGCGACGTCGACGTTTGTTTTACAGATGATCAGAGCGACCAGGAATCGAGTAAAAACAATGATTAATGGACCGATTTCTGGACATATTCAAAAAGACTTTGCTCTTATGTAGCTAAATTATGCATGTACATAAATTAGTTATGAATTGTTATTTTATAAAATTATTGTGAAAGGAAAACCTTGCAGAATGAGCAAATGTTCCCCCTAGTAAATTAAAAAACTCTGTGAAGGAGGCACTCATGAAGTTAATCTCATAACATGTTTATTGGTATTGAGTACATCTCAGCGCCCCCAATGTGGAGCTGCACTTTATAAAGACGGGTTTATGCCATACAACAGATGCATTTATGTCATCTTTTCTTGTTAATGCTTTCTTTAAAAATGTCTGACCGTTTCCTTATAACACAACGTTGGAATTACCTGTCAAATCCGCACTTTCTTTTATTTTTATTTTTTAACCAAAAGCATTTAACTCATTCTGTATAAATGATTTTTTTTTTTTTTTGCAGAACAACAGGCACCTACCA

Function

symbol description
prdm13 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human PRDM13 (PR/SET domain 13).

NR:

description
PR domain containing 13, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_09783491_09789725.mRNA True 2467 mRNA 0.48 5 9783491 9790186

Neighbor

gene id symbol gene type direction distance location
CI01000027_09774092_09779035 NA coding upstream 4362 9773992 ~ 9779129 (+)
CI01000027_09767653_09768743 NA coding upstream 14089 9767653 ~ 9769402 (+)
CI01000027_09661837_09663114 POU3F2B, POU3F2 coding upstream 119634 9661523 ~ 9663857 (+)
CI01000027_09562530_09572606 NA coding upstream 210856 9562496 ~ 9572635 (+)
CI01000027_09484034_09501412 KLHL32 coding upstream 281236 9484034 ~ 9502255 (+)
CI01000027_09931428_09937694 NA coding downstream 139429 9929615 ~ 9937752 (+)
CI01000027_09958003_09959274 NA coding downstream 165639 9955825 ~ 9960262 (+)
CI01000027_10048220_10051640 NA coding downstream 257941 10048127 ~ 10051744 (+)
CI01000027_10055186_10067131 AKIRIN1 coding downstream 265000 10055186 ~ 10067131 (+)
CI01000027_10072946_10084310 RHBDL2 coding downstream 282251 10072437 ~ 10084566 (+)
G143034 NA non-coding upstream 73231 9701004 ~ 9710260 (+)
G143110 NA non-coding upstream 100724 9682526 ~ 9682767 (+)
G143093 NA non-coding upstream 190084 9592745 ~ 9593407 (+)
G143075 NA non-coding upstream 225111 9558122 ~ 9558380 (+)
G143066 NA non-coding upstream 305305 9476391 ~ 9478186 (+)
G143156 NA non-coding downstream 74445 9864631 ~ 9865105 (+)
G143159 NA non-coding downstream 106507 9896693 ~ 9898052 (+)
G143205 NA non-coding downstream 221687 10011873 ~ 10013349 (+)
G143195 NA non-coding downstream 250720 10040906 ~ 10044074 (+)
G143230 NA non-coding downstream 300513 10090699 ~ 10090928 (+)
G143033 NA other upstream 53940 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 1522665 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 1751450 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 1831549 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 2311777 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010058 prdm13 coding NC_007127.7 CM002900.2 32749591 ~ 32755900 (+)
bowfin (Amia calva) AMCG00004018 prdm13,LOC106583971,LOC106605027 coding CM030121.1 CM030121.1 29500845 ~ 29506998 (-)