CI01000027_10526694_10541815 (GNL2)


Basic Information

Item Value
gene id CI01000027_10526694_10541815
gene name GNL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10526694 ~ 10542130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10526694_10541815.mRNA
ATGGTTAAACCAAAATTCAAGGGGAAAAGCTCCATAAATCCCTCAAACTCCAGCAGTAATCCCGTATTTATCTTTTTTAACATTCCCAACCCTACAGACCGAGTGAAGGGAGCTGGAGGGAACAACATGAGGGACCGTGCCACCATCAGACGATTGAATATGTACAGACAGAAGCAGAGATGCAACAGTCGAGGTAAGGTGATCAAGCCCTTGCAGTACCAGAACACAGTAGCTCCTGGAACTGTGGCCCGAGTTGAGCCCAACATCAAGTGGTTCGCCAATACACGTGTCATCAAGCAGTCATCCTTGCAGAAATTCCAAGAAGAGATGAACGCAGTAAAGAAAGATCCGTACCGAGTAGTGATGAAACAGAGCAAGCTACCTATGTCCTTGCTGCATGACAGAATAAAGGCACATAACTCCAAGGTGCACATTCTGGACACGGAGACATTCGAAACAACGTTTGGACCAAAGGCACAAAGAAAGAGGCCCAACTTGACTGTGGGAGAGCTGAAGGACTTTGCTGAACAGGCAGAGGTCTCGGCTCAGAGCTACAGTGCTGAGAAAGACCGTGATTTGGTGTCTGAGGACAGCGGAGTCAAGGATGAGGCTAGGGAGGAAATCTTCAAGAAGGGTCAGTCAAAGAGGATCTGGGGTGAGCTGTATAAGGTGATCGACTCTTCGGACGTCATTATCCAGGTGCTGGATGCTCGGGACCCTATAGGCACTCGTTCCCAGAGCATTGAGTCCTACCTAAAGAAAGAGAAACCTTGGAAGCATCTCATCTTTGTGCTCAATAAGTGTGACCTCATTCCCACATGGGTTACGAAACGCTGGGTTGCAGTTCTCTCTCAGGAATACCCCACTTTGGCCTTTCACGCCAGCCTTACCAACTCCTTCGGCAAGGGCTCCCTAATCCAGCTCCTGCGGCAGTTCGGCAAGCTCCACTCAGACAAAAAGCAGATCAGTGTTGGCTTCATTGGTTACCCCAATGTTGGAAAGAGCTCTGTTATCAATACCCTGCGCTCCAAAAAAGTCTGTAACGTGGCACCCCTTGCTGGTGAGACTAAGGTCTGGCAGTATATCACACTAATGAGACGCATTTTCCTCATTGACTGTCCTGGCGTCGTCTACCCCTCCGACGACAGCGAGACTGACATTGTGCTGAAGGGAGTGGTCCAAGTGGAGAAGATCCGAACTCCAGAGGATCACATCGGAGCGGTGCTGGAGAGGGCCAAAGCAGAGTACATCCAGAAGACATACCGCATTCCGTCCTGGAGCTCCGCCGAGGATTTCCTGGAAAAGCTAGCCTTTCGCACCGGAAAACTGCTTAAGGGTGGAGAGCCAGATCTGTCTACTGTGTCTAAAATGGTTTTGAATGATTGGCAGAGGGGACGCATCCCCTTTTTCATGAAGCCCCCTGGGGGTGAGATGGATGAAGAGAACAAAGCACAACCGATGCTGGAAATGCCTGAGATGGAAACCGAGAAGGAAGAGTTGGAAAACAGACTTGAAGCTCAGGATGTGGAGGGGGCCTCATCTAGCCAGCAGGACGATCAAAAGCTGCTGAGACAGAAACAAGAGGAGATGCAGAAAATCTTCAGTAACGTCAAGCAGAACTTTGGCAAAATTAACGTCGCTCCGGAGTTCAGCGAGGAGGATCTTGTGCCTGTCGAGATGCCTGACATACTGGATCCCTCTGACATTCCTAAAGGCCTTTCTGAAAAGGTGTTTACTGAAACCATAGCAAAGCAGAATGCTGCAAAGAATCTGCAACGGAAAGCTGTGACAGTGGGCAAAAAGAGGAAAGCTGCAGAAGATGATGAGGAGCTTGCACAGCCTACCAAACTCACATCTAAAGAGAAAAGAAGACTGGAGCGTGCCCAAAGAGTGAAGAAAGTGGGGGTCCGCTATTATGAGACGCACAATGTCAAGAACAAGAATAAGAACCGAAAAATGCCCTTGGATGGCAAGAAAGCCAAACGAGCTAAGCGATAAGACCTGCTCAAATACCCATTCAAATCAATCCGTTTCCATCGTCATGTCGGTGGCTAAGTTGGAACATCTGGAGTGGAATCAGTGATTAGTGTAAAGGTGAAGGTTTGGTTGATCTGTGATGCAATCGTTCCAATGCACTTTATTCATACTGTGGCACCAGCCATCCTCATGAACATTATGACTACAGTTCATTTCAGCACTGTGCATTTTCGAAATTTTAACTTAAGACAGTGTCCTGATTCAGAAGTGTTGAAATGTGGATCATGTACCCGTGTGTCTATGTCTGTTCTTTTTCTTTTGATTTGAGAAAAAAGA

Function

symbol description
gnl2 Predicted to enable GTP binding activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); neural retina development; and regulation of exit from mitosis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human GNL2 (G protein nucleolar 2).

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14537 NUG2, GNL2; nuclear GTP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10526694_10541815.mRNA True 2313 mRNA 0.48 16 10526694 10542130

Neighbor

gene id symbol gene type direction distance location
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding upstream 78339 10437783 ~ 10448355 (+)
CI01000027_10408345_10410012 NA coding upstream 116332 10406096 ~ 10410362 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding upstream 155389 10368407 ~ 10371305 (+)
CI01000027_10098742_10105152 RRAGC.S, RRAGCA, RRAGCB, RRAGC coding upstream 421386 10098712 ~ 10105308 (+)
CI01000027_10090545_10093306 CX55.5 coding upstream 432948 10090545 ~ 10093746 (+)
CI01000027_10545286_10547348 NA coding downstream 3156 10545286 ~ 10547894 (+)
CI01000027_10548922_10551337 GPN2 coding downstream 6792 10548922 ~ 10551652 (+)
CI01000027_10574326_10578596 NA coding downstream 32196 10574326 ~ 10579827 (+)
CI01000027_10580514_10590458 ZDHHC18A coding downstream 38061 10580191 ~ 10590903 (+)
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding downstream 67722 10609852 ~ 10617522 (+)
G144285 NA non-coding upstream 1334 10525072 ~ 10525360 (+)
G144275 NA non-coding upstream 24451 10502015 ~ 10502243 (+)
G144266 NA non-coding upstream 38893 10487373 ~ 10487801 (+)
G144265 NA non-coding upstream 39353 10487140 ~ 10487341 (+)
G144251 NA non-coding upstream 67128 10459325 ~ 10459566 (+)
G144300 NA non-coding downstream 12834 10554964 ~ 10555279 (+)
G144305 NA non-coding downstream 55924 10598054 ~ 10598262 (+)
G144296 NA non-coding downstream 79078 10621208 ~ 10636932 (+)
G144298 NA non-coding downstream 98094 10640224 ~ 10640459 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 non-coding downstream 119541 10661410 ~ 10669742 (+)
G143033 NA other upstream 797143 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2265868 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2494653 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2574752 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3054980 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location