CI01000027_10548922_10551337 (GPN2)


Basic Information

Item Value
gene id CI01000027_10548922_10551337
gene name GPN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10548922 ~ 10551652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_10548922_10551337.mRNA
ATGATGTCATCACATCCTTCAAAACCAGCTCTACATTTCGGCCAGGTTGTGATTGGTCCACCTGGTTCAGGTAAAACCACTTATTGCCGGGGCATGCAGGAGTTCCTGAGCCACCTCGGGCGTAAGGTGGTTGTTGTAAACCTGGATCCTGCCAATGAAGGGTTGCCTTATCCATGTGCCGTGGACATATCCGAGCTCATCACTCTGGATGATGTGATGGACGGTCTAAAACTTGGCCCCAATGGTGGCCTCATCTACTCTATGGAATATTTAGAGGCAAATTTGGACTGGTTAGAGAACAAAATGAAGCACCACCATGACTGCTACTTCCTTTTTGACTGCCCAGGTCAGGTGGAACTCTACACTCATCATAATTCGGTCAAGAATATATTTGCACAGCTGTCGAAGTGGAATTTTAGGCTGACTGCAGTGCATCTGGTGGATTCCCATTACTGTGCTGATCCGGCCAAGTTCATCTCTGTGCTGTGTACGTCCCTGTCCACCATGCTGCATGTTGAATTGCCACATGTCAATGTGCTCTCAAAAATGGACCTCATTGAGCAATATGGCAAACTTGCATTCAATCTGGACTTCTACACTGAGGTTCTTGATCTGTCATATTTGGTGGAGCACCTCGCTTCGGACCCTTTCTTCAAGAAGTTTCACCACCTGAATGTGAAGTTAGCTGAAGTGATCCAAGACTACAGCTTAGTGTCTTTTGTACCTCTTAACGTACAGGACAAGGAAAGCATGATGCAAGTTTTGAGAACTGTGGACAAAGCCAATGGCTACTGCTTTGGAGACCTGGAGGAGAGGAACCTGCAGTTATGTTTCATTATTTCATGCAATCACAATCGTGAAAGATTGTCCTTAACTATTTATTTCAGAACTCTTGGTGTACAGGAGAAATATGTGGAGGTCGCTGGAAAAACTGTGGAGGATGAAGTCATGGATTTGTAACCCCTTTTTTTATATTGATTAAAAAAGAAAAAGTTAAAAAAAAAAAAAGTAGCAGAGTTGTCTTATTTCACATATTCAAACATTGTAGACATGATGAACTTCCACGAAGGTGCAAATAAAATACATAATAAAAATAAAATAAAATAATAGAATAAATGTTTTTTTGTTCCCCACATTGAAATACTTATTCTGCATTTAGTAACAACGAAATCATTGTCTTGAGCACTTAAAATGGTTTTAAGTAAAATTGATCTACATAAGCAATAATTAGACCATTCAGTTTATTAGATGTGTGTTCACACGGTTAATAATTAA

Function

symbol description
gpn2 Predicted to enable GTPase activity. Orthologous to human GPN2 (GPN-loop GTPase 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K06883 K06883; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_10548922_10551337.mRNA True 1275 mRNA 0.40 5 10548922 10551652

Neighbor

gene id symbol gene type direction distance location
CI01000027_10545286_10547348 NA coding upstream 1028 10545286 ~ 10547894 (+)
CI01000027_10526694_10541815 GNL2 coding upstream 6792 10526694 ~ 10542130 (+)
CI01000027_10437783_10448105 FHL3, FHL3A, FHL3.S coding upstream 100567 10437783 ~ 10448355 (+)
CI01000027_10408345_10410012 NA coding upstream 138560 10406096 ~ 10410362 (+)
CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding upstream 177617 10368407 ~ 10371305 (+)
CI01000027_10574326_10578596 NA coding downstream 22674 10574326 ~ 10579827 (+)
CI01000027_10580514_10590458 ZDHHC18A coding downstream 28539 10580191 ~ 10590903 (+)
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding downstream 58200 10609852 ~ 10617522 (+)
CI01000027_10641759_10654240 TCEA3 coding downstream 89796 10641448 ~ 10654240 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 coding downstream 109758 10661410 ~ 10669742 (+)
G144285 NA non-coding upstream 23562 10525072 ~ 10525360 (+)
G144275 NA non-coding upstream 46679 10502015 ~ 10502243 (+)
G144266 NA non-coding upstream 61121 10487373 ~ 10487801 (+)
G144265 NA non-coding upstream 61581 10487140 ~ 10487341 (+)
G144251 NA non-coding upstream 89356 10459325 ~ 10459566 (+)
G144300 NA non-coding downstream 3312 10554964 ~ 10555279 (+)
G144305 NA non-coding downstream 46402 10598054 ~ 10598262 (+)
G144296 NA non-coding downstream 69556 10621208 ~ 10636932 (+)
G144298 NA non-coding downstream 88572 10640224 ~ 10640459 (+)
G143033 NA other upstream 819371 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2288096 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2516881 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2596980 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3077208 7468964 ~ 7471999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location