G144296


Basic Information

Item Value
gene id G144296
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 10621208 ~ 10636932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU163924
GGGCAGAGAAAAGAATGGAAAAATGAACAGGGCGAGTCTCTTTTCAATAGGAAGAAACCAAATAAGTCCTATTTTTGAAGGAATGCTATAAAGTTGTAACTTGATGTGCAGACCACAAAAGGAAGGACTGACTGCACCAAAGAGTTTTCAGCTTCTGTGCTTAGTGGCCTCTTCCTCCACTTGGGCTGATTTGGAAAACACCCTCAGCAAATTGACCATGGAGGTGAGTCACAGGACCTCGTCTTTTACAAACCCTGACCTTCTGGGCCGCTTAAGGCAATGTGCTAGTCCCAACGGACTACGTCTCCTCTGGTCTACGGATGTGTTTAGAAAGTTGCCCTGCCAACAGCCTCTTGCATTACATCAGCTACCTCGGGCCTCTCTCTAGTGACATCACCCCTTACCCCCGTTTTACGGCTCTTTCCTTCTGACCTGAGATCGACCTTAAAGCCATTGTGGAGATTTTCCATCCAGGTTTTGGAGAGGAGACCCCTGCTTCCGCTAGGCTGCAAGAATCATGTGGTATCTATAAATCCTGTGCAAACGTGAAAGAACAGTTGAAATATGTTTGGATGGATCCCAGTCATCATTTATACTTTACAACACTTTTTCCTTTTCATTTTGTTACTATCAAATGTTAGAGACAGTCAAATAATGAGAGTTAATTTCAGGCTTTAAGGGGGTAAAGAATAATTTGTGATGAGAGGTGCCATTTTGCTTCAACACATTTTGCTACTCTCTGTTTTCGCACTTTTTAAGGAGGTAACAACTCCTGTAAGCTTCTAAGAGTTGTTTATGACAAGTCTTTGCCAAGCACCATGGAACCTCCAAAACTCTCTTATCCAAGCGTCCAGGTATGAAGTGATGTCATAAAGGAAAAATGACACAAGATCCTACTTTGCTCATGGCTCAGTCTGTTGTGATTGGTCTACCGCTTACAGTGTGTGTCGGAAACAAAATGCCTATTACCATATCTGAATTTCAGCTCCGGAGGCTTCCTCAGCATTTAATACACAGTAATAAGAAAGATGCCGTTGGTTTTTCCATATCAGTTCAAGCATGAGTCTTCAACCTTTTGAAGTGCATGCAAAGTAGATTTGCAGTGCAGAAAACAACGTCTTCTCAACATGTCGACAACACAAACTAAACTCTTAGAGGCCTCAGCTACAACAATGTTTGAGGTCGGGTCAAAGTACATTCGCTGGCAGCCAATGAAGACCACAGGCTGGCATTATGCAAATGTGTTACATTGCTATGTAGGTTTGTAACAGGAAGTGAGACTGAAATTGCTGATGACTTGTTTCAGCAGTTCTGAATCAATTCTTTCTTATAGGAGATAATAACTTTATTTGTCGTGCACTTTGATCTTTACAACTTTGCAAACCTTTTACCTTCACAAACAGCTATATTACACTTTGCATGAAAGGTAATATTTGAAAAACTTTAAAAATACAAATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU163924 True 1459 lncRNA 0.41 2 10621208 10636932

Neighbor

gene id symbol gene type direction distance location
CI01000027_10609852_10616902 FAM46B, FAM46A, FAM46BA, FAM46BB coding upstream 3686 10609852 ~ 10617522 (+)
CI01000027_10580514_10590458 ZDHHC18A coding upstream 30305 10580191 ~ 10590903 (+)
CI01000027_10574326_10578596 NA coding upstream 41381 10574326 ~ 10579827 (+)
CI01000027_10548922_10551337 GPN2 coding upstream 69556 10548922 ~ 10551652 (+)
CI01000027_10545286_10547348 NA coding upstream 73314 10545286 ~ 10547894 (+)
CI01000027_10641759_10654240 TCEA3 coding downstream 4516 10641448 ~ 10654240 (+)
CI01000027_10662823_10669634 OPRD1B, OPRD1 coding downstream 24478 10661410 ~ 10669742 (+)
G144305 NA non-coding upstream 22946 10598054 ~ 10598262 (+)
G144300 NA non-coding upstream 65929 10554964 ~ 10555279 (+)
G144285 NA non-coding upstream 95848 10525072 ~ 10525360 (+)
G144275 NA non-coding upstream 118965 10502015 ~ 10502243 (+)
G144266 NA non-coding upstream 133407 10487373 ~ 10487801 (+)
G144298 NA non-coding downstream 3292 10640224 ~ 10640459 (+)
G143033 NA other upstream 891657 9728815 ~ 9729551 (+)
CI01000027_08255251_08264629 NA other upstream 2360382 8255073 ~ 8264897 (+)
CI01000027_08026500_08029412 ENSAB, ENSA other upstream 2589167 8025788 ~ 8032041 (+)
CI01000027_07947743_07951397 NA other upstream 2669266 7947657 ~ 7951942 (+)
CI01000027_07469157_07471720 NA other upstream 3149494 7468964 ~ 7471999 (+)

Expression


Co-expression Network