G103137 (pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138)


Basic Information

Item Value
gene id G103137
gene name pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4288023 ~ 4290680 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU128841
TCACAGTAAATCAAAATGATGTTGAACCAAAATGGAGTACAGACtgaggttttacattttacattctcaCATTTACTTTCTCGTCATGTTCTAGGtcaaataaagttaataaaataaaggtgaCCGGTTTGTGTTGCCTGTCAAATATGCTGTGATTTTGTGTTGTACATATTCTGTATAAATTTAACTACTGTCGCTTTACAGGCTTAGAAACATGATAAAAAAAGACGGGGAATCCGCTGGTTGTGTCTCACACTTTATAAAAGACAGAAGACTTTTtcttgtatatatgttttatgtaagtaataaaatattactataacataaatataaatgcgACTTTGCAGTCTACATTTTGCaacaaacatacaacaaatgtagtAAACAAATCATTTGAAATCCACTGCAACAGAATCATTAAAGAGCTAAACCAAAAAAGCTCCAAAACAcattaaggaaataaatatagaaatggtCAAATTCATAAAtgaaatcatattaaaatatcttCTTGGAATATTAGTAAGTGTACAAAACTGtccagaaaaaagaaaaaaaataacagaacaaaaacaaaaccataaattcaaatacatatgtTTACATATTCGACATATTTACACATTGGAAAGAAATAAATTGGCAACTTTATAATCGGTTTTGTAAAAACTAAACATGTTTATCCTATAGCGTCGCTCAATGCAATTCCCATTGCTCGCCCCTGGACGTCAGGTTTGATGTTCAGCCCAATTGTAAACAGTAAAGCACATCATTATCAGGGCTCGgcttatatttttttcccttttattaagaaaacaaacaataaatatgtaatttacaaCTGATCCCttcattacatttcataaaaccCTTCCAATATACTCGGTAATGGAATGGTTTAGTAAAAGGAGAGAaacaaatcttttaaaataaggtttgatttttttatggAGGGGGTGGAACGCCGACCTGGGCATTTTAAGTTAGATacctgagttttttttttttttttttttctgcttcttttaaatgttacctCAAATACCTCCCTAATGGTTTGGGTAGACAGTAGACAGCGCAACTAGTCCAGAAAGATTGCAAACAGGAACATCATTcacacaattgaaaataaacGCATGCACAACCGAGGAGGGGACAAACATCAGACAGAAAATAAGTGCtccatgcaaataaacaaacaacaaacatatcGCATGTGTTTCCCGGATAAGTAAGTGTAGTGTCCCATTCAGTCGACTGTCTTGAACTTTCAACTATGCCAGCTGCGATGCTTAATAGACTGGGGGATTATTGGCAAAAGACTGCTGTCAGACAGAATTGCGAATAGcttctaaaaaatataattttaaataaagatttacctgcaacaaacaaacaaaacaaacacaggtttTCCAACACCATGGTGTATTGCAGTAGTCATCATTCTCAGTATCGTAGTGTTTATGTTTAAGAAcaagttgttaaaataaaaactgaaagttATACTTGTCATTAAAGCAGAGGCGCTAGAAGATTAAAAATCATAGACAAACGAAAAGATCACAACaattcatacaaaaaataatatatatatggacaacGACCTTGAGGAATAGAAAACCATTTGTGTCCACTGTCTGTGAGATTGGCATTGAAAGCGCTTTGTGGGAGAgattcctctttctttttcttttctgtaaatGGGGTTTAGCAGGTGGACATGGAGAAGAAATAGCCCGGCTGCGGCGCTTGTTCCCTTTAAACCCCGAGGAGGGTCCGATTCGCTATGATATCAGATCATTTGGTAAATACAGAGATGAATTTCACTTTTACGCGTGTGGATTCTTTCACAACATGACATTTTTACTgccccacacacaccacaatCCCGGTCACTGGCCATACTCACTCTGCAGTCTTTGCTAtgtccctttttctttttcttttctttttctttttttattataaatttgTAAATTCCATAgtcctgtttttttctatttgatttaaacaataGTTCATGAAAGCAGTCACTGTACTGAGGTCTGCAGTGTGTGGTGGAGAGGGGGGGTCTCTGCTTGTGAATATACATCCTCCATACTCGGGTGCGGGACCCCGGCGGGAGtcattcttttctctttctgtcttctGTTGCAAAACCAAACTCTCACAACTTCCTTTTCCAACTGCAGAGTCCCCGCCAGGCTGGTGATTTCGTGGGCAGAGGGTTTGGGACATTTTAAGAAGTGGTTCTCCAGGGCGCCCTTGACCCCGACCTCGATGGAGGTCCTCTTCTTGCGCTTCCTGCCCTGCGCGGCTATCTTGTCCAAATTCGTGGGGCTGCCCGTGTTGGAGTCGGTCTCCTCCAGCCACTTGTTTAGCAGCGGCTTAAGTTTGCACATGTTCTTGAAACTCAGCTGTAAGGCTTCAAACCTGCAGATGGTGGTCTGGGAAAACACGTTGCCATAAAGGGTGCCCAGAGCCAAGCCCACGTCCGCCTGCGTGAAGCCCAGCTTGATCCGCCGCTGCTTGAACTGCTTGGCAAACTGCTCCAGGTCGTCCGAGCTGGGCGCGTCCTCGTCCGAGTGGTCCTGGTGGTGGCTGAAGGGCTGCTGGGGGGACTCCAGCTGGTTGTCGTGGCTGCCTGCGTCTTCG

Function

symbol description
pou3f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development; cell differentiation; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including forebrain neural rod; hindbrain neural keel; nervous system; neural plate; and presumptive diencephalon. Orthologous to human POU3F1 (POU class 3 homeobox 1).

NR:

description
PREDICTED: POU domain, class 3, transcription factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128841 True 2658 lncRNA 0.40 1 4288023 4290680

Neighbor

gene id symbol gene type direction distance location
AMCG00010916 NA coding upstream 37975 4239933 ~ 4250048 (+)
AMCG00010915 fhl3,LOC107587754,LOC107716861,LOC107704953 coding upstream 59095 4220702 ~ 4228928 (+)
AMCG00010912 meaf6,LOC106589015 coding upstream 112023 4171483 ~ 4176000 (+)
AMCG00010911 snip1,LOC107700737,LOC107755266,LOC107597115 coding upstream 117015 4167178 ~ 4171008 (+)
AMCG00010913 gnl2,LOC107700739,LOC104945619 coding upstream 137151 4138667 ~ 4150872 (+)
AMCG00010918 NA coding downstream 279420 4570100 ~ 4572543 (+)
AMCG00010933 NA coding downstream 788528 5079208 ~ 5080356 (+)
AMCG00010941 NA coding downstream 861156 5151836 ~ 5156195 (+)
AMCG00010936 NA coding downstream 869330 5160010 ~ 5160444 (+)
AMCG00010935 NA coding downstream 875914 5166594 ~ 5169607 (+)
G103035 NA non-coding upstream 694616 3592668 ~ 3593407 (+)
G102959 NA non-coding upstream 825520 3459862 ~ 3462503 (+)
G102945 NA non-coding upstream 830366 3434919 ~ 3457657 (+)
G102944 NA non-coding upstream 854876 3432815 ~ 3433147 (+)
G102859 NA non-coding upstream 1157759 3093934 ~ 3130264 (+)
G103150 NA non-coding downstream 147197 4437877 ~ 4438136 (+)
G103152 NA non-coding downstream 245657 4536337 ~ 4619656 (+)
G103258 NA non-coding downstream 843547 5134227 ~ 5140721 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 1063089 5353769 ~ 5355664 (+)
G103333 NA non-coding downstream 1165678 5456358 ~ 5460573 (+)
G103078 NA other upstream 204437 4049938 ~ 4083586 (+)
G103030 NA other upstream 707746 3577235 ~ 3580277 (+)
G102947 NA other upstream 844489 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 859594 3421082 ~ 3428429 (+)
G102921 NA other upstream 889517 3331584 ~ 3398506 (+)
AMCG00010922 NA other downstream 343792 4634472 ~ 4642403 (+)
AMCG00010979 NA other downstream 2096356 6387036 ~ 6395484 (+)
G103542 NA other downstream 2351303 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 2601717 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 2780753 7071433 ~ 7103508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010068 pou3f1 coding NC_007127.7 CM002900.2 33593116 ~ 33595985 (+)
grasscarp (Ctenopharyngodon idella) CI01000027_10368925_10370031 POU3F1, POU3F1.L, POU3F1.S coding CI01000027 null 10368407 ~ 10371305 (+)