G103333


Basic Information

Item Value
gene id G103333
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5456358 ~ 5460573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129094
CATCAGCACCGCTTACCTGCAAGACTAAAGGCGTTGAAGGtaaacaggaaaagaaaatggaataaGTCTGCAAACTAACCCTGGTCCATAGAGCGAAGGTGCGACctacacacatgtatatttatacatggatattgatttaaaaagcaagaaCAGGTTGTTCTTTCTGTTGAGGACAATTCTAATGATGCTTAGATGCTTACTGCAAACTCCAATCTGCTTTGAGTGTCAGGCAGTGCATATACCAGCTGCATACTAATGTTCCCTTCACAGAACCTGCTggtataatataaatgtatatgattaaataaaaaacagcagtcTAGTGCTTTTGAGGGGAAGGGAGACAAGGGGGTGCTCCGTTAATGGATTGCtctttttctcctcttcctATTAATCTGGCAGATGCTCGGATACTCTGATCGTTGTAATGAAGGGAAAGTGGTATCCCGTAAATCAGGGGGATTGGTAAATATTTTGACAGACCACCttggccatttttttttttttgggggggggggNNNNNNNNNNGGTGAAGTTCATTTAAGGCTTCGACATTTGAACGTGTAAAGTCTTCACTTTTACATGATGCATTCTGgaaagggagggaaaaaaacatctgcactaTTTCACTATTGAGTCATTGCCAAGCAGACAAATTATATAATGTGGCAATGCAACTGCACATCTCTCAGTTCTGTACCCAAAATGTTGGAGAGTGCAGGTGCTGCTGCGGGAGTGTGTTAAATGCGCTAGTATGCGCCTGAGAGGCTGTTCGTGGCGGATTTGAACTGACTGCTGTGTTAGAGCCGTCTGCGTTACGGGGGTCAAAGGCTGAAGTCGGAGGCCAAGCAAAACAGCGGAAAATAGCACATAGAAAAGGGTAACCTATTAGAAGCAAACGTGTCATAACCGTTTTTAAAcgtacacaaatacataattagcTATTTCAACACAAAGTAACAGTTCTGCATTACAGCATGCACCTCAGATTGAAGAGTCCCAGAGGCTGCGATGCGCTTTCAGTTTGACCTACATATTGGAAACATTGCAGCGCATACTGTCCATCCCGTCAGTCCGCGCATTTCGCATTGCTCTCCGCCATCATTTACAAACACACGTATTATTTAGGATcggtgcatttattttttatcatcatATCAACCACAATATAGGGAACAATTGCAACAAATAAGAGATACTCTCACTAAACGTCTGCAAGGTAACAAGTACTGGGGACGGGTAGAATAAAATAACAGCGGGGCCTAGGCATGCAATAAAACCCGTGGGTTGCACAGGCACTAGTAAATGAcctcatattttattaataataacaattataattataattgaaaacataaatcTAGAAATGAAATATTAGCGCATTTCGTGTCCAGATCTGTCGATTCTATCCCTTTCAGGAGACGCGGGGTCTGATCGCACACATGAGCAGACAGGAGAGATGGCTGGATCAATGTGCGCATGCGCGCAGACCCCCCGGGCATGACAGCCTCGAGATTCACCCCGGCGAGCGGCGCGTGCGGTGCGGGGCGCAGGCACGTGCGGGGTCAGGGGTCATTCCCGCATTAACCATTTGCTGTCTGAGAAGAGGGGGGGCTGCTGCGACCCTCATAGTGACGAGCGGTTGACCGATTATAATGAGAAAAGAATAATTGCatgaggggggaaataaatcacAGGCACAATCTGTCCACTCAGCGGTGACAGATATCCCGAGGAGGGGCTCTGTGTTTGAAGTGATTGCACTGGCCTCTCATGCAGTCCGCAACCGGGATGCAgttgtgcatgtatatatgcattatacagatatacaagatatacatCTCACATGTCCTTGACGAAAGCATGCGATAAGCGGTATTATGACTGACCTGGCCGCCGCCGCAGGCCGCAGTCCAGCGCTGCTTCCCGGCACAGAAGACACTCACACTCCGTCACAAACATCCACAAACACTTCTCCGCTTTCCTGGTGTTTCCCGGGAGTAGCATCCCGACCAGACAGGACCTGAGCTGAGCCCcgatttatgattttttaacaGGCtagaacaataacaacaataatttttaaaatatacaacaacTAAATGTTAGCGCATGCGCTGCTGCTGGCTTCGCAAtgctacattatatatacaaatgtatcgAAACACGACACAACCATTACATTAACTGTTACATAAGCACATCCAAGTGAAGCTGGGAAACCGCCCGGGCCTGGCCTGTGTTTGTCACTTCAGTGAGCCCGCACTCTCTtctgtagtattattatattatagtattatattatagtattgtattgtattgtattgtattgtattatattgccCGTGTCGGCTCTCTGCTCACTCGCACGCTGTTCTCGCACTTTCGCTGCCGAAGGAAATGACGCAGATTTTGCGTCTCCCAGCCTTTAGCGGTGacttatttcatgttttttttaacttttaatgtcGTATTGTAGTTTTTTGGTTCACCATCTAGTGAATTAGattaggttttaatttatttaaaccacaTCCTAAATGTTACCATATGTAACTGTCCCAACATCGACACTaatttcaacacacacactttgaaaGGAGCCCATTGTTAGGCTAcagaagctgtgaaaatgtggggaaataatgataataaaaaatggaatgaaaaatacatacacgAGTTTATTAGTATAAAAATGGACGGGCAAATAAAAGCGCATTGACGTTTATTATCCCATGTAACTGCGTctacataatgtatttaaactacattctgttttacaataaatacatttaacaatgtGCTTTTTCAGCCGCCGCTTTGTGAAAAGCCTGTTTTATACCAGAAATAATGGCTTAGATCAATTAAGATACCTTCAATTAACATACCCTTCTGACAAAGTCAGGCTTTTCCGTTtctaataaagaaaaatcaaattaaaagtgattaaattaactttttttgtttgtttttaccacaatatattaaagaaacagGTGCTAACCAGCTACCTTTATCGTTATAAAGCAAATTACTATTTGCACATATGAAGGGATATCCTGTacttaatattatgtttttctgcaaacaaattatatatatagtgtctCGATGTCTATTTCTACCACATATAGtttctaaatatttgaaaacgACATGTTCTGCAACACTTGCCCTCATATATTTAATCATCattagatttaatttgttttaatttttcaaaaaaggggggaaaactCACTCTAATTCCTAATGTAAATGGGGGTCGGCTGAGGCTTTCCCAAGCGTAACTAATGGAAGGAGAAGATGGATGCATTTATGATAATTAGGGGTGTGAACATATCCATATAAATCCATAGAATAATAAGCGTGCAATTTGACTGATTATGTGCACATCGGATTGAAAATGAGAAACTGGATGTTAGAGGTTACCAGACAGCTGTTCCGCTGCAATTGTTTATATacgagtatatatatatatatatatagtagcagACCTGGGAAAAACCAATCGTTACATTAtatacactaatatatatatataagttaaaCTCTCTCAAGCAAGTTGATATTTCGAAGACCAAAAGACGACTGTTTGAAGGAGTaatcacaaaaaacaataattcatttCGTTaggtttgtatgtatttaaaataggtaaactgaaaaataagaaCTTGTATTAATTCTGTTAGGGGGAATAAACATAGAATACATAGAATCATCAGATCATTTCGTTGTGCCacagcaaatgaaaaataactcgACTGAAGCAGATATCATTTTTAAGATGAGTAACAAGActgcaaataatacatttaaaagagaataaatacatttaaaatggccattaattattaatattagtggATAATTAAATGCACAGATAGACAGAGCCACATAATTGTGTTCACATTTCTGTGTTTGCTGTGTTTGAAAGACACACAGGGATATCCAACATGGTGCAGATGTTGATGTGTGGCAGGTCCAGTTCAAGACTGTATTGCGCTGACGAAATGCAATTGGAACAGGTAGCTCTGAATACGCAGCAATAAAATCAATCTCCCGATGAAAGGAATAGCAGATTTAGCTGCTGGGTTGCTGTTCTGTAACACTGTGGATGCTGTGTCataatttgtgtctgtgttgaaTAAAATTCCAAAACCCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129094 True 4176 lncRNA 0.40 2 5456358 5460573

Neighbor

gene id symbol gene type direction distance location
AMCG00010942 NA coding upstream 172060 5283816 ~ 5284298 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding upstream 182226 5255095 ~ 5274132 (+)
AMCG00010935 NA coding upstream 286751 5166594 ~ 5169607 (+)
AMCG00010936 NA coding upstream 295914 5160010 ~ 5160444 (+)
AMCG00010941 NA coding upstream 300163 5151836 ~ 5156195 (+)
AMCG00010951 NA coding downstream 43804 5504377 ~ 5511682 (+)
AMCG00010956 NA coding downstream 133360 5593933 ~ 5599868 (+)
AMCG00010957 NA coding downstream 139346 5599919 ~ 5601213 (+)
AMCG00010962 NA coding downstream 473525 5934098 ~ 5939360 (+)
AMCG00010963 NA coding downstream 489853 5950426 ~ 5959972 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding upstream 100694 5353769 ~ 5355664 (+)
G103258 NA non-coding upstream 315637 5134227 ~ 5140721 (+)
G103152 NA non-coding upstream 836702 4536337 ~ 4619656 (+)
G103150 NA non-coding upstream 1018222 4437877 ~ 4438136 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding upstream 1165678 4288023 ~ 4290680 (+)
G103348 NA non-coding downstream 89485 5550058 ~ 5613434 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding downstream 156485 5617058 ~ 5652821 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding downstream 208552 5669125 ~ 5694122 (+)
G103413 NA non-coding downstream 502516 5963089 ~ 5965939 (+)
G103416 NA non-coding downstream 506944 5967517 ~ 5990587 (+)
AMCG00010922 NA other upstream 813955 4634472 ~ 4642403 (+)
G103078 NA other upstream 1372772 4049938 ~ 4083586 (+)
G103030 NA other upstream 1876081 3577235 ~ 3580277 (+)
G102947 NA other upstream 2012824 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 2027929 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 926463 6387036 ~ 6395484 (+)
G103542 NA other downstream 1181410 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 1431824 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1610860 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 3087790 8548363 ~ 8552605 (+)

Expression


Co-expression Network