AMCG00010936


Basic Information

Item Value
gene id AMCG00010936
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5160010 ~ 5160444 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010936
ATGTGCCTGGCCATCTTCCTGGGCTGGCTGTCCTGCACGGTCTCCTGCTGCGGCATGAAGTGCACCACCTGCGCCGGAGACGACAAGCAGACCAAAGCCGGGATCGCACTGTCGGGGGGGGTGCTGTTCATCGTCACGGGGGTCTGCGTGCTGGTGCCCATCTCCTGGACCGCCCACAACGTCATCAGCGACTTCTACAATCCCCTGGTGCCCCCGGTCCACAAGAGGGAGCTGGGCCAGGCAATCTACCTGGGCTGGGCGGCCGCCGTCATCCTCATGCTGAGCGGCGCCGTCCTGAGCAGCACCTGCCCCCAGGGGGTACAGCGCGATTACCGCAGGGGCTACTCTCGCAACTTCATGGGGGGCAACCGGGCATCTGCACCGCCCCCTCACCCCATCTCCAACACCAGCCTGCCCATTAAAGAGTATGTCtga

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010936 True 435 mRNA 0.65 1 5160010 5160444

Neighbor

gene id symbol gene type direction distance location
AMCG00010941 NA coding upstream 3815 5151836 ~ 5156195 (+)
AMCG00010933 NA coding upstream 79654 5079208 ~ 5080356 (+)
AMCG00010918 NA coding upstream 587467 4570100 ~ 4572543 (+)
AMCG00010916 NA coding upstream 909962 4239933 ~ 4250048 (+)
AMCG00010915 fhl3,LOC107587754,LOC107716861,LOC107704953 coding upstream 931082 4220702 ~ 4228928 (+)
AMCG00010935 NA coding downstream 6150 5166594 ~ 5169607 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding downstream 94651 5255095 ~ 5274132 (+)
AMCG00010942 NA coding downstream 123372 5283816 ~ 5284298 (+)
AMCG00010951 NA coding downstream 343933 5504377 ~ 5511682 (+)
AMCG00010956 NA coding downstream 433489 5593933 ~ 5599868 (+)
G103258 NA non-coding upstream 19289 5134227 ~ 5140721 (+)
G103152 NA non-coding upstream 540354 4536337 ~ 4619656 (+)
G103150 NA non-coding upstream 721874 4437877 ~ 4438136 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding upstream 869330 4288023 ~ 4290680 (+)
G103035 NA non-coding upstream 1566603 3592668 ~ 3593407 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 193325 5353769 ~ 5355664 (+)
G103333 NA non-coding downstream 295914 5456358 ~ 5460573 (+)
G103348 NA non-coding downstream 389614 5550058 ~ 5613434 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding downstream 456614 5617058 ~ 5652821 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding downstream 508681 5669125 ~ 5694122 (+)
AMCG00010922 NA other upstream 517607 4634472 ~ 4642403 (+)
G103078 NA other upstream 1076424 4049938 ~ 4083586 (+)
G103030 NA other upstream 1579733 3577235 ~ 3580277 (+)
G102947 NA other upstream 1716476 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 1731581 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 1226592 6387036 ~ 6395484 (+)
G103542 NA other downstream 1481539 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 1731953 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1910989 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 3387919 8548363 ~ 8552605 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000223_00351242_00353502 NA coding CI01000223 null 351211 ~ 353682 (-)