AMCG00010990 (pum1)


Basic Information

Item Value
gene id AMCG00010990
gene name pum1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6892397 ~ 6920931 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010990
CGCCAGCCCCCACTGAGCCGCCATGTTGTTGGAGTGAAAGCTTGGAGTCGGAGAGTTTTGGGGCTGAAATCCATTTCCATCCACCCGCTCCGCCTGTGCTGGTGGAATGAGCGTTGCGTGTGTGTTGAAGAGAAAAGCAGTGCTCTGGCAGGACTCCTTCAGCCCCCACCTTAAACAGCACCCACTCGAGACAAGCCAGCCCAGCATGCCTGTGGTGTTGACTACGGGATCGGGAGCTCCCCCAGCAGGGCAAACCCCCCAGCCTGCTCCTCCCAGCCAGCCCCTCCCTGCAGGAGCACACTCGGGGCAGGTGCCTGGATCGGCAGGGGGGACGGGGCGCTCCCAGGATGACGCTATGGTGGACTACTTCTTCCAGAGGCAGCATGGGGAGCAGCCCGGCGGAGGGGGGTACAACAACGGCAAACACCGCTGGCCCACTGGCGATAATATTCACTCCGACAATCAGGTGCGGTCAATGGATGAACTGAACCATGATTTCCAGGCCCTGGCATTGGAGGGAAGAGCTATGGGAGAGCAGCTCCTGCCTGGGAAGAAGTTCTGGGAGTCAGATGATTCAAGTAAAGATGGACCAAAAGGGATATTTCTTGACCAGTGGAGGGACAGTGCATGGGGGGCCTCAGATCATTCGGTCTCCCAGCCAATCATGGTGCAGCGGCGGCCTGGCCAGGGTTTCCACGGCAGCAGCGAGGTGGGCTCAGTGCTGTCGCCGCGGTCGGAGAGCGGGGGTCTTGGGGTCAGCATGGTGGAGTACGTCCTGAGCTCGTCTCCAGGAGAGAAGCTGGACTCCTGCCTCAGGAAGGCAGCTTTTGGCCCTGGAGACCCAGAAGTGGATGAcaatgaaaagagagagaaaaagcccAAGGCTACTTTTGACACTGACAAGCTAGGTGACTTAAAGGAAGTGGAAGGTGATGTGATGGACAAGCCCAACGGCCTGCCAGTGCAGAATGGGATTGATGTGGACGTCAAGGATTTTAGCCGCACACCCGGGAACTGCCCCCCCCCTGGGGCCGAGGTGGACCTCCTGGGCCCGAGCCAGAACGGCTCTGAAGCTCTGGCCCAGCTCTCGAACAGCAACGGGGCGAAGCCGGTGGAGGACTTCCCGAGTGTGGAGTCTCAGAACGTGCCGCTGGACCACATGGAGTCGGTGGGCATGGAGCCTCTGCAGTTTGACTACTCCGGCAACCAGGTGCCCATGGACTCCACTGCGGCCACTGTGGGACTCTTTGACTACAACTCCCAGCAGCAGCTGTTTCAGAGGCCCAACGCCCTGGCTGTCCAGCAGCTGACGGCcgcccagcagcagcagtatgCTTTAGCCGCTGCGCAGCAGCCCCACATAGGTCTTGCTCCCGCTGCCTTTGTCCCAAATCCATACATCATCAGCGCGGCTCCTCCGGGAACAGACCCCTATGCAGCCGGACTTGCCGCTGCAGCCACTCTGGGCCCTGCAGTGGTTCCCCATCAATACTATGGAGTTACCCCCTGGGGAGTGTATCCAGCCAACCTCTTCCAACAGCAGGCTGCAGCGGCTGCTGCAGCAAGCAACTCGGCCAATCAGCAAGCAGCAAACCAGAACCAGCAAGGCCAGCAGCAGgtTCTTCGTGCAGGTGGCAGCCAGCGCCCTTTGACCCCTAACCAGAGCCAGCAAGGGCAGCAAACAGACCAGCTAGTGGCTGCAGCAGCTGTCAACTCTGCCTTAGCCTTCGGACAGGGGCTGGCGGCTGGAGTGCCAGGCTATCCGGTTCTGGCTCCAGCTGCTTATTATGACCAAACAGGAGCCCTGGTAGTGAATGCGGGTGCCAGGAGTGGGCCAGTGCGGCTTGTGGCCCCTGCTCCTGTGATCATCAGCCCCACAGCTGCACAAGCAGCTGTagcggcagcagcagcctcTGCCAACGGAGCGAATGGCGGGCTAGCGGGCGGGGCCAGCGGTCCTTTCCGTGCCCTGGGAAACCAGCAGCCCCAGCCGCAGCAACAGCCCGGGAACAACCTGGCGTCCAGCTCCTTCTATGGGAACAACTCGCTCAACACTAGCTCCCAGAGCAGCTCCCTCTTCTCCCAGGGCTCCGGCCAGCCGGGCAGCAATTCACTGGGCTTCGGAGGGAGCAGCTCCCTGGGGGCGACCCTTGGCTCGACACTGGGGGGCTTTGGCACTGCAGtggcGAACTCGAACACCGGCAGTGGCTCGCGCCGGGACTCTCTGACTGGCAGCTCGGACCTGTACAAGAGAACCCCCAGCAGCTTGACTCCCATTGGACACGGCTTTTACAATGGCCTTAGCTTCTCCTCCTCCCCGGGGCCGGTGGGAATGCCTCTGCCTAACCAGGGACCCAGCCACTCACTCACCCCGCCCCCCTCGCTGTCCACACACGGCTCCTCATCCAGCCTCAACTTGGGTGGCCTGACTAATGGCAGTGGGCGCTACATCTCTGCAGCCCCTGGTGCGGAGGCCAAGTACCGCAGCGCCAGCAGCGGCTCCAGCCTGTTCAGCCCCAGCAGCCAGCTGTTCCCCTCCTCGCGGCTGCGCTACGGCATGTCCGACGTCATGCCCTCCGGACGCAGCCGGCTGCTCGAGGACTTCCGCAACAACCGCTACCCCAACCTGCAGCTGCGCGAGATCGCCGGGCACATCATGGAGTTCTCTCAGGACCAGCACGGATCAAGATTCATTCAGCTGAAGCTGGAGCGAGCCACCCCAGCAGAGAGGCAGCTGGTCTTCAGTGAGATCCTTCAGGCTGCCTACCAGCTCATGGTGGACGTATTCGGGAATTACGTCATCCAGAAATTTTTTGAATTTGGGAGCCTGGATCAGAAGCTGGCCCTGGCCGAGCGCATTCGAGGACATGTCCTGTCTCTGGCACTGCAGATGTACGGCTGCCGAGTGATTCAGAAAGCCCTGGAGTTCATTCCCTCAGATCAGCAGGTTATTGTGTTCGCCCTTTCCACTCATCCGTATGGCTGCCGTGTGATCCAGCGCATCCTGGAGCACTGCCTGCCTGAGCAGACCCTgcccatcctggaggagctgcacCAGCACACGGAGCAGCTTGTGCAGGACCAGTATGGAAACTACGTGATCCAGCACGTTCTGGAGCACGGCCGTGCCGAGGACAAGAGCAAGATCGTGGCTGAGATCCGGGGCAATGTTCTGGGACTGAGCCAGCACAAGTTTGCCAGCAACGTGGTGGAGAAGTGTGTGACTCACGCCTCGCGGGCAGAGCGTGCCATGCTGATCGATGAGGTGTGCAGTATGAATGACGGCCCGCACAGTGCCTTATACACCATGATGAAGGACCAGTACGCCAACTATGTGGTGCAGAAAATGATCGACGTCGCGGAGCCAACCCAGCGCAAGATTGTCATGCACAAGATCCGACCCCACATCGCCACCTTGCGTAAATACACCTATGGCAAGCACATCCTGGCCAAGCTAGAGAAGTACTACATGAAGAACGGCGTGGACCTCAGCCCCATCTGCGGACCGCCCAACGGTATCATGTAAACGCTTGTTACCCTTCCTCTTAGACCTCCAACCAGAGAGCTGGGCTCAGCCAGCCCCTGAGCAACCTTCTGCTGGAAACGGTGGGCATCGACATCCCCTCAATGTGCCCAACTCACCCACCTTCTCCgctttctttttccccccaagaggttgcttatttattttacaagatgccttttttggtttgtttttgaacCATACTGCTAactagtagtttttttttttaatttaaaagccaactgccctgattttttttttttttaatctttatcaCTGGTGTATAGAATTCTTGTACATaggtttaaagaaaagaaaatgtacatgttggagcagtgtgtttttcttcactgttGTATTTATAATCATTGTGGAGCCTGCGGGGCAGCTGGGTTATGTTTCATTAGCTTTGGCAGCCAACTTTAGGGCAAAACTCATGAGTTGCCATTGTTAATGGATaaggaattatgtttttttttattaaagcttgATTTACTTTAGAAGAATTTCTCATCTTTTGCTGACTGCTACTGCTATGGCACAGGCACtttgttaacttttttttgGAACTTTGGAAAGtcagtttaattttcatttaaatttactCACTTTAAATTGTAGAGCGAGGGCATGGTCTGAATATcccggctctctctctctccctctctctctctctctctttttctctttttttgctAACACAAAGCAGACTTTTGATTATTTAGCATGGgagaaaagttaaaagaaatTAAGTTTTTGGTCTtgcttatataaatatatagtgtatacTTGGTGTAGacttttgcatatatatataaaaaatttgtagttttttctggttttgatGTTCAATCTGTAACTATAATGTACCCTAGTAGTGAACACACTTTTGATTGTataattgtacatttgtaaacCTTCTGTAATGTAAATGTGGAAAACTTGGAATCAACTATACAACCCTTTTtggtataaagaaaaatacaaaaaaaaaaattagaaacctgtgcatttcagtgtatattcacactttttttttctttttttttttttggttgtggCATATAGTTGttgtatattgtaaattgtaatatctatcaaatattttgttttgaaaggccCTTTATATACAGCATAGTacttgtaaaaagaaaacaaaatgcttcatGATTTTAACATTGTCACTACTTACTTTAAACTAAAAAGGTGATTTCCAGATGTGAAAAACATTCTTCTGTTAAAgtagtgactttttttttatgatcttttaaaacaatgtaatggttttccttttttgtcacatttaaagaaaaaggtgGATTTCCTACCAAACCCTTTAGGATTTGCTCATCTTACATCATATTCTGTGGGTTTCACCCTTTCCCCTTTTTGTACAAAAAATAcctgtattttgcttttttttttttttgtctactTGT
>TU129402
CTAGGAGAAGAATCCTGAACTCCTTTTATATCAGACGGGCCCTGCCTGACGATGCATTATCACTGTTTCAAATACTCCTCTTTTCCCCAGTTGGTCTCAAACAAATGTAGTTTACAGGCCGTTCTAGTTTGAGGAATCTTAAATTATCTTAACAGTGTTGTTTTTGCAAAACCGTGGCTATTGCCTGACTGTGCCACTCTCTCTCCGCATGCTGCCAGGTGTTCGCCCTTTCCACTCATCCGTATGGCTGCCGTGTGATCCAGCGCATCCTGGAGCACTGCCTGCCTGAGCAGACCCTgcccatcctggaggagctgcacCAGCACACGGAGCAGCTTGTGCAGGACCAGTATGGAAACTACGTGATCCAGCACGTTCTGGAGCACGGCCGTGCCGAGGACAAGAGCAAGATCGTGGCTGAGATCCGGGGCAATGTTCTGGGACTGAGCCAGCACAAGTTTGCCAGCAACGTGGTGGAGAAGTGTGTGACTCACGCCTCGCGGGCAGAGCGTGCCATGCTGATCGATGAGGTGTGCAGTATGAATGACGGCCCGCACAGTGCCTTATACACCATGATGAAGGACCAGTACGCCAACTATGTGGTGCAGAAAATGATCGACGTCGCGGAGCCAACCCAGCGCAAGATTGTCATGCACAAGATCCGACCCCACATCGCCACCTTGCGTAAATACACCTATGGCAAGCACATCCTGGCCAAGCTAGAGAAGTACTACATGAAGAACGGCGTGGACCTCAGCCCCATCTGCGGACCGCCCAACGGTATCATGTAAACGCTTGTTACCCTTCCTCTTAGACCTCCAACCAGAGAGCTGGGCTCAGCCAGCCCCTGAGCAACCTTCTGCTGGAAACGGTGGGCATCGACATCCCCTCAATGTGCCCAACTCACCCACCTTCTCCgctttctttttccccccaagaggttgcttatttattttacaagatgccttttttggtttgtttttgaacCATACTGCTAactagtagtttttttttttaatttaaaagccaactgccctgattttttttttttttaatctttatcaCTGGTGTATAGAATTCTTGTACATaggtttaaagaaaagaaaatgtacatgttggagcagtgtgtttttcttcactgttGTATTTATAATCATTGTGGAGCCTGCGGGGCAGCTGGGTTATGTTTCATTAGCTTTGGCAGCCAACTTTAGGGCAAAACTCATGAGTTGCCATTGTTAATGGATaaggaattatgtttttttttattaaagcttgATTTACTTTAGAAGAATTTCTCATCTTTTGCTGACTGCTACTGCTATGGCACAGGCACtttgttaacttttttttgGAACTTTGGAAAGtcagtttaattttcatttaaatttactCACTTTAAATTGTAGAGCGAGGGCATGGTCTGAATATcccggctctctctctctccctctctctctctctctctttttctctttttttgctAACACAAAGCAGACTTTTGATTATTTAGCATGGgagaaaagttaaaagaaatTAAGTTTTTGGTCTtgcttatataaatatatagtgtatacTTGGTGTAGacttttgcatatatatataaaaaatttgtagttttttctggttttgatGTTCAATCTGTAACTATAATGTACCCTAGTAGTGAACACACTTTTGATTGTataattgtacatttgtaaacCTTCTGTAATGTAAATGTGGAAAACTTGGAATCAACTATACAACCCTTTTtggtataaagaaaaatacaaaaaaaaaaattagaaacctgtgcatttcagtgtatattcacactttttttttctttttttttttttggttgtggCATATAGTTGttgtatattgtaaattgtaatatctatcaaatattttgttttgaaaggccCTTTATATACAGCATAGTacttgtaaaaagaaaacaaaatgcttcatGATTTTAACATTGTCACTACTTACTTTAAACTAAAAAGGTGATTTCCAGATGTGAAAAACATTCTTCTGTTAAAgtagtgactttttttttatgatcttttaaaacaatgtaatggttttccttttttgtcacatttaaagaaaaaggtgGATTTCCTACCAAACCCTTTAGGATTTGCTCATCTTACATCATATTCTGTGGGTTTCACCCTTTCCCCTTTTTGTACAAAAAATAcctgtattttgcttttttttttttttgtctactTGTAAGTGATTGTAACAtagtccatttttttttcttgttgaaaTACAGAATTGTAACACTACGCGGTGTACATTTATGAAAGCCTTGTGTATATTTCCAATGAACTTTTTGCAAGCACACTTGTAACCATATGTGTATAGTTAACAAAATCCTGTGTATGCTTATGCCTGGGCAACTATTTTTTGTAACTCTTGTTGTAGATTGTCTCTAAACAATGTGTgatctttattttgaaacaaaaaaaaaaaacctaaaatttcacatttt

Function

symbol description
pum1 Enables mRNA binding activity. Involved in pole plasm mRNA localization. Predicted to be active in cytosol. Is expressed in ovary. Human ortholog(s) of this gene implicated in cerebellar ataxia type 47. Orthologous to human PUM1 (pumilio RNA binding family member 1).

NR:

description
PREDICTED: pumilio homolog 1 isoform X2

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K17943 PUM; pumilio RNA-binding family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010990 True 4962 mRNA 0.52 21 6892397 6920667
TU129402 False 2491 TUCP 0.39 4 6917766 6920931

Neighbor

gene id symbol gene type direction distance location
AMCG00010991 nkain1,LOC106570599,LOC107593567 coding upstream 11123 6871823 ~ 6881274 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding upstream 109541 6775564 ~ 6782856 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding upstream 130274 6754924 ~ 6762123 (+)
AMCG00010981 NA coding upstream 382435 6493616 ~ 6509962 (+)
AMCG00010974 NA coding upstream 480601 6408918 ~ 6411796 (+)
AMCG00010993 NA coding downstream 83152 7004083 ~ 7022923 (+)
AMCG00010995 NA coding downstream 186354 7107285 ~ 7110941 (+)
AMCG00010996 ppp1r8a,LOC105012537,LOC108441741,LOC105903676,LOC108272406 coding downstream 223808 7144739 ~ 7148896 (+)
AMCG00010998 NA coding downstream 236559 7157490 ~ 7165268 (+)
AMCG00011001 med18,LOC106605104 coding downstream 269290 7190221 ~ 7199316 (+)
G103541 NA non-coding upstream 255209 6636963 ~ 6637188 (+)
G103540 NA non-coding upstream 262407 6628488 ~ 6629990 (+)
G103538 NA non-coding upstream 264959 6623485 ~ 6627438 (+)
G103501 NA non-coding upstream 378579 6513312 ~ 6513818 (+)
G103470 rpl13a,LOC107720993 non-coding upstream 488094 6400638 ~ 6404303 (+)
G103599 NA non-coding downstream 41055 6961986 ~ 6962191 (+)
G103670 NA non-coding downstream 387674 7308605 ~ 7309609 (+)
G103684 NA non-coding downstream 452744 7373675 ~ 7384727 (+)
G103688 NA non-coding downstream 469071 7390002 ~ 7452292 (+)
G103678 NA non-coding downstream 474697 7395628 ~ 7398120 (+)
G103542 NA other upstream 249769 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 496913 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 2249994 4634472 ~ 4642403 (+)
G103078 NA other upstream 2808811 4049938 ~ 4083586 (+)
G103030 NA other upstream 3312120 3577235 ~ 3580277 (+)
AMCG00010994 NA other downstream 150502 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 1627432 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 2609543 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 3282686 10203617 ~ 10271863 (+)
G104273 NA other downstream 3897757 10818688 ~ 10819423 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location