G103501


Basic Information

Item Value
gene id G103501
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6513312 ~ 6513818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129329
AAAACATATCATACAGAGGGCCAAACACTGTCCAGGTTAATTGGGCTTGACATCAACCAATCAATAgtgatacataaatacaatatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggtcccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcaacagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggcaaatttggaagccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatactcacgtgcccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129329 True 507 lncRNA 0.50 1 6513312 6513818

Neighbor

gene id symbol gene type direction distance location
AMCG00010981 NA coding upstream 3350 6493616 ~ 6509962 (+)
AMCG00010974 NA coding upstream 101516 6408918 ~ 6411796 (+)
AMCG00010969 kdm1a coding upstream 461645 6035491 ~ 6051667 (+)
AMCG00010964 NA coding upstream 525632 5977850 ~ 5987680 (+)
AMCG00010967 NA coding upstream 535497 5977080 ~ 5977815 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding downstream 241106 6754924 ~ 6762123 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding downstream 261746 6775564 ~ 6782856 (+)
AMCG00010991 nkain1,LOC106570599,LOC107593567 coding downstream 358005 6871823 ~ 6881274 (+)
AMCG00010993 NA coding downstream 490265 7004083 ~ 7022923 (+)
AMCG00010995 NA coding downstream 593467 7107285 ~ 7110941 (+)
G103470 rpl13a,LOC107720993 non-coding upstream 109009 6400638 ~ 6404303 (+)
G103463 NA non-coding upstream 257774 6255224 ~ 6255538 (+)
G103459 NA non-coding upstream 360046 6152993 ~ 6153266 (+)
G103431 NA non-coding upstream 484255 6026960 ~ 6029057 (+)
G103416 NA non-coding upstream 522725 5967517 ~ 5990587 (+)
G103538 NA non-coding downstream 109667 6623485 ~ 6627438 (+)
G103540 NA non-coding downstream 114670 6628488 ~ 6629990 (+)
G103541 NA non-coding downstream 123145 6636963 ~ 6637188 (+)
G103567 ppce,LOC107688393,LOC106923076,LOC103154994,LOC107592053,LOC107706142,LOC107654745,LOC106588491 non-coding downstream 393284 6907102 ~ 6927247 (+)
G103599 NA non-coding downstream 448168 6961986 ~ 6962191 (+)
AMCG00010979 NA other upstream 117828 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 1870909 4634472 ~ 4642403 (+)
G103078 NA other upstream 2429726 4049938 ~ 4083586 (+)
G103030 NA other upstream 2933035 3577235 ~ 3580277 (+)
G102947 NA other upstream 3069778 3436618 ~ 3443534 (+)
G103542 NA other downstream 128165 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 378579 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 557615 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 2034545 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 3016656 9530474 ~ 9549520 (+)

Expression


Co-expression Network