G103416


Basic Information

Item Value
gene id G103416
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5967517 ~ 5990587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU129220
CCCAGGCCACTCAAGTCCCAGCACGATCCTCCACTGCAGGAATTCCAGGAAAAAGCTGCCTTCAGTTCAGACTAAGACAGGAAATCATGAAGCAAAGAGAATCCACACGGGCAGATGTTGAGAAGAGATTTGTCAAAAAGGAAATTTTCTCAATCACTTAGTcactCGACTCACTGGCATCCTCTGTCCCGTCAGTGGCGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU129220 True 201 lncRNA 0.49 2 5967517 5990587

Neighbor

gene id symbol gene type direction distance location
AMCG00010963 NA coding upstream 7545 5950426 ~ 5959972 (+)
AMCG00010962 NA coding upstream 28157 5934098 ~ 5939360 (+)
AMCG00010957 NA coding upstream 366304 5599919 ~ 5601213 (+)
AMCG00010956 NA coding upstream 367649 5593933 ~ 5599868 (+)
AMCG00010951 NA coding upstream 455835 5504377 ~ 5511682 (+)
AMCG00010969 kdm1a coding downstream 44904 6035491 ~ 6051667 (+)
AMCG00010974 NA coding downstream 418331 6408918 ~ 6411796 (+)
AMCG00010981 NA coding downstream 503029 6493616 ~ 6509962 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding downstream 764337 6754924 ~ 6762123 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding downstream 784977 6775564 ~ 6782856 (+)
G103413 NA non-coding upstream 1578 5963089 ~ 5965939 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding upstream 273395 5669125 ~ 5694122 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding upstream 314696 5617058 ~ 5652821 (+)
G103348 NA non-coding upstream 354083 5550058 ~ 5613434 (+)
G103333 NA non-coding upstream 506944 5456358 ~ 5460573 (+)
G103431 NA non-coding downstream 36373 6026960 ~ 6029057 (+)
G103459 NA non-coding downstream 162406 6152993 ~ 6153266 (+)
G103463 NA non-coding downstream 264637 6255224 ~ 6255538 (+)
G103470 rpl13a,LOC107720993 non-coding downstream 410051 6400638 ~ 6404303 (+)
G103501 NA non-coding downstream 522725 6513312 ~ 6513818 (+)
AMCG00010922 NA other upstream 1325114 4634472 ~ 4642403 (+)
G103078 NA other upstream 1883931 4049938 ~ 4083586 (+)
G103030 NA other upstream 2387240 3577235 ~ 3580277 (+)
G102947 NA other upstream 2523983 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 2539088 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 396449 6387036 ~ 6395484 (+)
G103542 NA other downstream 651396 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 901810 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1080846 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 2557776 8548363 ~ 8552605 (+)

Expression


Co-expression Network